KEGG   Xenopus tropicalis (tropical clawed frog): 493312
Entry
493312            CDS       T01011                                 
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    493312 (cpsf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xtr03021]
    493312 (cpsf4)
   03019 Messenger RNA biogenesis [BR:xtr03019]
    493312 (cpsf4)
Transcription machinery [BR:xtr03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     493312 (cpsf4)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     493312 (cpsf4)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 zf-CCCH_3 Torus zf-CCCH_2 zf-CCHC zf-CCCH_4 zf-CCHC_3 zf-C3H1
Other DBs
NCBI-GeneID: 493312
NCBI-ProteinID: NP_001007933
Xenbase: XB-GENE-948302
UniProt: Q66KE3
Position
9:complement(47254085..47264443)
AA seq 269 aa
MQELIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRFELPMGTTEQPP
LPQQTQTQQKQNNNQVLQRSSSLIQLTSQNSPVSQQRSPQTIGVMQSQSGNQGNRGPRPL
DQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq 810 nt   +upstreamnt  +downstreamnt
atgcaggagttaattgcttgtgtggatcatatccggttcgatctggaactggccgtggaa
caacagctgggggctcaacccctccctttcccgggcatggacaagtctggggctgctgtt
tgtgagttttttctgaaatcggcctgtggaaaaggcggaatgtgtccgtttagacatatc
agtggggagaagacagtggtctgtaaacattggttacgaggcctttgcaagaagggagac
cagtgtgaatttttgcacgagtatgatatgactaaaatgccagagtgctacttctactcc
aagtttggtgagtgcagtaacaaagagtgcccatttttgcatattgacccggaatcaaag
ataaaagactgcccatggtatgacaggggcttctgtaagcacgggcccctctgtaggcac
cggcatactcgaagagtaatttgtgtcaattacttggtgggattctgtatcgaaggccct
aactgtaaattcatgcatccacgttttgaattacctatgggaaccacagaacagccgcct
ctaccccagcaaacacagactcaacagaagcaaaataataaccaggtgttacaaaggtca
tcctcactcattcagctaacaagccaaaactctcctgtcagccaacaacgttccccacag
acaatcggtgtcatgcagtcacaaagtggcaaccaggggaaccggggacctaggccactg
gaccaagttacctgctataagtgtggtgagaaaggacattatgccaacagatgtacaaaa
ggtcacttggctttcttgagtgggcagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (31)   

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