KEGG   Xenopus tropicalis (tropical clawed frog): 496607
Entry
496607            CDS       T01011                                 
Symbol
snf8
Name
(RefSeq) vacuolar-sorting protein SNF8
  KO
K12188  ESCRT-II complex subunit VPS22
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    496607 (snf8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xtr04131]
    496607 (snf8)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xtr04147]
    496607 (snf8)
Membrane trafficking [BR:xtr04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-II complex
    496607 (snf8)
Exosome [BR:xtr04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   496607 (snf8)
SSDB
Motif
Pfam: EAP30 RPA_interact_C DUF4896
Other DBs
NCBI-GeneID: 496607
NCBI-ProteinID: NP_001011185
Xenbase: XB-GENE-961618
UniProt: Q5RJU0
Position
10:complement(12244705..12250654)
AA seq 257 aa
MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLLQMSKQLEMFKTNLEEFASKHKQEIRK
NPQFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHHNGGLIT
LAELHQHVLKGRGKLAQDVSQDDIIRAIKKLKVLGNGFGIIPVGGSYLVQSVPAELNMDH
TVVLQLAEKKGFVTVNEIKSSLNWETERAKHVLEHLLKEGLAWIDSQAQGEAQYWLPALF
TALYAQQINMDENGGPS
NT seq 774 nt   +upstreamnt  +downstreamnt
atgcaccgaagaggggtgggagcgggggctatagccaagaagaaactggcggaggccaag
tacaaggagcgaggaacggttcttgctgaagatcagctgcttcagatgtccaagcagttg
gaaatgttcaaaaccaatttggaagagtttgccagtaagcacaagcaagagatccgtaaa
aaccctcagttcagagtccagttccaggatatgtgtgctacgattggtgtggatcctctt
gcctctggcaaaggattctggtcagaaatgctgggcgttggagacttttattacgaactc
ggggttcagataattgaagtgtgtctggctctaaaacaccacaatggaggtctgattacc
ctggctgagctccatcagcatgtactgaaaggcagagggaaacttgcacaggacgttagt
caggatgatatcattcgggcaattaaaaagctaaaagtacttggtaatggatttggcatc
atccctgttggaggttcttatttagtccagtcagttcctgctgagctaaacatggatcac
acagtagtattgcagttagcagagaaaaaaggatttgtaacagtaaatgaaattaaatca
agtttaaattgggaaaccgaaagagccaaacatgttctggaacacttactaaaggaaggc
ttggcttggatagactctcaggctcaaggtgaagcccagtactggctgccagctctcttt
actgcactttatgcccaacaaattaatatggacgagaacggaggaccttcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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