KEGG   Xenopus tropicalis (tropical clawed frog): 549567
Entry
549567            CDS       T01011                                 
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1
  KO
K14315  nucleoporin NDC1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    549567 (ndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    549567 (ndc1)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     549567 (ndc1)
SSDB
Motif
Pfam: Ndc1_Nup
Other DBs
NCBI-GeneID: 549567
NCBI-ProteinID: NP_001016813
Xenbase: XB-GENE-5736320
UniProt: F6SM99
Position
4:complement(97306305..97321275)
AA seq 664 aa
MTMLRERQVLRWRVAASLAWSVILLPVCCVVFIVLSQIQILHPIQWLTDSISDLTSSYTI
FCLLLISAILGLQCTFLMEYYTVVPSIPCSRLALIGNTLLPHRIVHSLAHVVMGVLASWC
CAVMSKGKYQLIVVSCTSLPSEDESDKPSLCLNESHLFQLLCGAFFGYCYSLQYFVHNMN
YLSFPSIQQYKYLQFRRCLPLIIKQSSFQSLYFTRNYAILYYLFGNIPRTWIQTALNLHI
DRQQPSLDTLRGLLNLTVFYQIWLSGTFLLSAWYMVWIFFRIYTTEARIFPVQTSFAEEA
EKCLPFILSSNTLPLVKYLAMQDLVLLSQYSPSRRQEVFSLSQPGGHPHNWTAISKECLN
LLSSLTSRLIAHQEAAASNGRMKVPSSPKQTRKSSSSSGTSLIEDSAEQTQKLSTVPRIG
IPSLLKTTSLKSSLDTGSPFTPPGVKRMSESLDPNTPWHDSVQSPHIMRRSAKLWTSDSS
VQKNGSEVSNLSPVTLSPVCNGAKQGIFSTWFQHKLDQIKNFLSKRGLIMYLFSKHPEAS
SEDVFADAQIHIWALEALSHLVAASFSEDRMGVVQTSLSAVLATFFTLQEAVEKHFKLPH
ASSKPVRNPGSLLDSSYKTLRFSLRAALKTAIYRITTTFGEHLHAVPVSSEHQKKLQQFL
DFKE
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgaccatgctccgagagagacaggttctccggtggcgagtggccgccagccttgcttgg
tcagtcatacttctgcctgtgtgctgtgtcgtctttattgtccttagccagatacaaatt
ttacatcccatacaatggcttacagattccatcagtgatcttacgagcagttacacaatc
ttctgtctcttgttaataagtgccatcttgggactgcaatgtacttttcttatggagtat
tacacagtggtgccgtctattccctgctctcgactggcccttattggaaacactctcctt
ccgcatcgtattgtgcactctttagctcatgttgtcatgggggtgctggcctcctggtgc
tgtgctgttatgagcaaagggaaatatcagcttatagttgtttcctgcacttccctacca
agtgaggatgagtctgacaaaccttctctttgcctcaatgagagtcatctctttcagtta
ttgtgtggtgctttctttggctattgttacagtctccagtattttgttcacaacatgaac
tatttgtccttcccatcaatacagcaatacaagtatctgcagtttagaagatgtctacca
cttattataaagcagagcagtttccagtctctgtacttcactcgcaactatgccattctc
tactatttatttggcaacattccacgaacatggatccaaactgcactaaaccttcacatt
gacaggcagcagccctcacttgacacactaaggggactcttgaatctgacagtcttttac
cagatatggttgtctggcacttttctgctttccgcttggtacatggtctggattttcttc
agaatttatacaacagaggctcgtatcttccctgtacagacctcctttgctgaagaagca
gaaaaatgccttccattcattttgagtagtaatacacttcctcttgtaaagtatttggcc
atgcaagatcttgtgttgctctctcagtattcaccatctagacgacaggaagtgtttagc
ctgagccagccaggtgggcatccacacaactggactgcaatctccaaagaatgtttgaac
ttactgagcagtttgacatccagattaattgctcatcaggaagctgctgcaagtaatgga
cggatgaaagtcccatcctcccctaagcagactagaaagtcctcaagcagctcaggtaca
tctcttattgaagactcagctgagcaaactcagaagttaagtaccgttcctagaataggt
atcccctctctactaaagactacctctctaaaatcctcattggacactggaagtccattt
acacctcccggagttaaacgaatgtctgaatctctggacccaaataccccatggcacgac
tctgtccaaagtccccacatcatgagaaggagtgcaaagctgtggacatcagattctagt
gttcagaaaaatggctctgaggtttccaatctttccccagtaacgcttagccctgtatgt
aatggtgcaaaacagggaatcttctctacatggttccagcacaagcttgatcagatcaaa
aacttcttgtcaaagagaggtctgattatgtacctgtttagtaagcatccagaggcttct
agtgaggatgtatttgcagatgcacagattcatatttgggcactggaagcattatctcac
ctcgtggctgcctccttctcagaagacagaatgggagtagtacagacctctctttctgct
gtacttgcaactttctttactttgcaggaggctgtggaaaaacattttaaactcccccat
gcatccagcaaaccagtgagaaaccctggtagtttactggactcttcctacaagaccctg
aggttttcacttcgagctgctttaaaaacagcaatctacaggataaccacaacatttgga
gaacacttacatgctgttcctgtctcatccgagcatcagaaaaagcttcagcaatttctc
gacttcaaagaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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