KEGG   Xenopus tropicalis (tropical clawed frog): 549776
Entry
549776            CDS       T01011                                 
Symbol
ctdp1
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase
  KO
K15732  RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:xtr01009]
    549776 (ctdp1)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xtr03021]
    549776 (ctdp1)
Enzymes [BR:xtr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     549776 (ctdp1)
Protein phosphatases and associated proteins [BR:xtr01009]
 HAD phosphatases
  Fcp/Scp phosphatases
   549776 (ctdp1)
Transcription machinery [BR:xtr03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Others
     549776 (ctdp1)
SSDB
Motif
Pfam: NIF Biotin_lipoyl
Other DBs
NCBI-GeneID: 549776
NCBI-ProteinID: NP_001017022
Xenbase: XB-GENE-479716
UniProt: Q28F82 A0A8J0PJE6
Position
6:complement(97244528..97291009)
AA seq 570 aa
MLGMQNRAQEEGELSQSSQSCEVRFSGPRPLRLVEWKVSAGASVQIGSVLALAVPILGAE
VREQRSHEEPGRPHRAPERKIKSDRAGVVQELCLKPGEVCPAGGVLVRLFSCNHPVVMKG
LCAECGQDLTQLQSKNGKQQVPYSTATVSMVHSVPELMVSSEKAEQLGREDQLRLHRNRK
LVLMVDLDQTLIHTTEQHCQHMSRKGIFHFQLGRGEPMLHTRLRPHCKEFLEKIAKLFEL
HVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPYSKTGNLRNLFPCGDSMVCIID
DREDVWKFAPNLITVKKYVYFQGTGDINAPPGSREAQMKSKVSCSKPSEVTEQPEALQDS
EHSKNTLVVEEHSNGHRKAVKELNGGCTNSELSKKDTECTDGLHEQDSTNSQLTDALNSK
NVKPLADKPPSLEQDERTNISNPQSKTGAAKDLDFDLSSDSDSEGETRKISSPSASESEN
ECKRSWRKTNKRDEECTTELCTDVGSKKARPENHSCFESKDTLPVEDDEMEVQSAEQDSL
CDLGNGCTDKKEIETESQNSEQSGITVGEC
NT seq 1713 nt   +upstreamnt  +downstreamnt
atgctaggcatgcaaaatcgagctcaggaagagggtgagctttcccagtccagccagtcc
tgtgaggtgcgcttctcgggcccccgacccctgcgtctggtagaatggaaggtttccgca
ggggcctcagtacagattggctcggtgttggccctagcggtgcctattctgggagctgaa
gtcagggagcaacgcagtcatgaggagccggggaggccgcacagagcgcctgagaggaaa
atcaagtcggaccgtgcaggggtcgtgcaggagctatgcctgaagccgggagaagtctgc
cctgccgggggtgttctggtaaggttattcagctgtaaccatcctgttgtaatgaagggc
ctttgtgcagaatgtggccaagacttaacacaattacaaagtaagaatggaaagcagcag
gtgccttattcaacagccacagtttctatggttcatagtgtcccagaactcatggttagc
tcagaaaaagcagagcagctaggtcgtgaagaccaacttagattacatcgaaataggaaa
ctggtccttatggttgatttagatcagactttaatccacaccacggaacaacattgccag
catatgtctagaaagggcatatttcactttcagctaggaaggggagaaccaatgctccac
actcggctacgtcctcactgcaaagaattcttagagaagattgcaaagctgtttgaactg
catgtcttcacttttggtagcagactgtatgcccatactatagcaggttttctagatcca
gaaaagaagcttttctctcaccgaatattgtcccgagatgaatgtattgatccctattcc
aaaacaggaaatcttaggaaccttttcccttgtggggactctatggtttgcattattgat
gaccgagaagatgtttggaaatttgcacctaatttgataacagttaaaaagtatgtgtac
tttcaaggcactggtgatattaatgcacctcctggttcaagggaagcacagatgaagagc
aaagtaagctgttcaaaaccttcagaagtaacagagcagcctgaagctttacaagattct
gaacattcaaagaacactctcgttgtggaggagcacagtaatggtcacagaaaagctgtg
aaggaactgaatggggggtgcactaacagtgagctttccaaaaaggatacagagtgcact
gatggactacatgaacaagattccactaatagtcaacttacagatgcattaaatagtaaa
aatgtgaaaccattggcagataaacctccatccttagagcaagacgaaaggacaaatatt
tctaatccccagtcaaagacaggggcagcaaaagacctagattttgacttgtccagtgac
agtgatagtgagggtgaaaccaggaaaatatcatctccttctgcatcagaaagtgaaaat
gaatgtaaaagaagttggagaaaaacaaacaaaagggatgaagaatgtacaacagaatta
tgtacagatgttggctccaagaaagcgaggccagaaaatcactcttgctttgagtcaaag
gatacattgccagtagaagatgatgagatggaagtgcaatctgcagagcaggatagcctt
tgtgatttaggtaacggctgtacagataaaaaagagattgaaacagagtcccagaatagt
gagcagtctggtatcactgtaggagagtgctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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