KEGG   Xenopus tropicalis (tropical clawed frog): 594953
Entry
594953            CDS       T01011                                 
Symbol
hdac1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082  ATP-dependent chromatin remodeling
xtr03083  Polycomb repressive complex
xtr04110  Cell cycle
xtr04330  Notch signaling pathway
xtr04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    594953 (hdac1)
   03083 Polycomb repressive complex
    594953 (hdac1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    594953 (hdac1)
   04350 TGF-beta signaling pathway
    594953 (hdac1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    594953 (hdac1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xtr03036]
    594953 (hdac1)
Enzymes [BR:xtr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     594953 (hdac1)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     594953 (hdac1)
   HDAC complexes
    Sin3A-HDAC complex
     594953 (hdac1)
    BRAF-HDAC complex
     594953 (hdac1)
    REST complex
     594953 (hdac1)
    SHIP complex
     594953 (hdac1)
    MiDAC complex
     594953 (hdac1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     594953 (hdac1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    594953 (hdac1)
  Chromatin remodeling factors
   NuRD complex
    594953 (hdac1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 594953
NCBI-ProteinID: NP_001025564
Xenbase: XB-GENE-479583
UniProt: Q5BL48
Position
2:complement(86418880..86432238)
AA seq 480 aa
MALSQGTKKKVCYYYDGDVGNYYYGQGHPIKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS
SVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVMSKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPLLMLGG
GGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDSVHDDSGEEDEEDPDKRISIRSSDKRIACDEEF
SDSEDEGEGGRRNVASFKKVKRVKTEEEKDGEEKKDVKEEEKPKDEKTDSKRVKEETKSA
NT seq 1443 nt   +upstreamnt  +downstreamnt
atggcgctgagtcaaggaacaaagaagaaagtgtgctattactatgatggtgatgttgga
aattattattatggacaggggcatcccataaaacctcatagaattcgtatgacacacaac
ctgctgctgaactatggactttaccggaaaatggagatctatagaccccacaaagccagt
gcagaagagatgacaaagtatcacagtgatgattatataaaattcctgcgctccatacga
ccagacaatatgtccgaatacagtaaacagatgcagagatttaatgttggtgaggactgt
ccagtgtttgatggcttgtttgaattctgccaactctccacggggggctctgtagcaagc
tctgttaaactaaacaaacaacagacggacatttcagtaaactggtctggtggccttcat
catgccaagaaatctgaggcatctggtttttgttatgtcaacgatattgtccttgccatc
ctggaactattgaagtatcaccagagagttctgtatattgatatagacattcaccacggt
gatggtgtggaggaggccttttacacaactgatagagttatgacagtatccttccacaag
tatggagagtattttcctggaactggtgatctgagagatattggtgcagggaaaggcaaa
tattatgctgtgaattatcccttacgggatggaattgatgatgagtcctatgaagcaatt
tttaaaccagtaatgtctaaagttatggagatgtaccagcccagtgcagtggtcctacag
tgtggagcagattccttatccggggatagacttggatgtttcaatttgaccatcaaagga
catgccaagtgtgtggagttcataaagacctttaacttgccactgcttatgctaggaggt
ggaggttacactatcaggaatgtggctcgttgctggacatatgaaacagctgtggctctg
gactctgagatccctaatgagcttccatacaatgattattttgaatattttgggccagac
ttcaagcttcatatcagtccatccaacatgaccaatcagaacactaatgaatatctggag
aaaatcaagcagcgcctttttgagaacttgcgcatgcttcctcatgctccaggagtccag
atgcaagccatcccagaggactctgtacatgatgacagtggtgaagaagatgaggaagat
cctgacaagcgcatttccattcggtcatcggataaaaggattgcgtgtgatgaggagttc
tctgattctgaagatgaaggggaaggaggtcgcagaaacgtggccagtttcaagaaagta
aaacgggttaaaacagaggaggaaaaggatggagaagaaaagaaagatgttaaagaagag
gagaaacctaaagatgagaagacagacagcaaacgggtaaaagaagagaccaaatctgcc
tga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (23)   

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