KEGG   Xenopus tropicalis (tropical clawed frog): 733972
Entry
733972            CDS       T01011                                 
Symbol
rbm8a
Name
(RefSeq) RNA-binding protein 8A
  KO
K12876  RNA-binding protein 8A
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013  Nucleocytoplasmic transport
xtr03015  mRNA surveillance pathway
xtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    733972 (rbm8a)
  09122 Translation
   03013 Nucleocytoplasmic transport
    733972 (rbm8a)
   03015 mRNA surveillance pathway
    733972 (rbm8a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    733972 (rbm8a)
   03041 Spliceosome [BR:xtr03041]
    733972 (rbm8a)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     733972 (rbm8a)
Spliceosome [BR:xtr03041]
 Complex C
  Other components
   EJC/TREX
    733972 (rbm8a)
SSDB
Motif
Pfam: RRM_1 RRM_3 RRM_5 RRM_7
Other DBs
NCBI-GeneID: 733972
NCBI-ProteinID: NP_001039147
Xenbase: XB-GENE-6250837
UniProt: Q28BZ1
Position
8:142191546..142195356
AA seq 174 aa
MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGADEGTRARIREDYDSVEQD
GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVE
YETYKEALAAMEGLNGQDLMGQPISVDWGFVRGPPKGKRRSGRRRSRSPERRRR
NT seq 525 nt   +upstreamnt  +downstreamnt
atggcggatgtgctggatttacacgaagctggcggggaagacttcgctatggatgaagat
ggggacgagagtatccacaaactgaaggaaaaggccaagaaaaggaagggcagaggattc
ggtgcagatgaaggcaccagagcgaggatccgggaagactatgacagtgtggagcaggat
ggggacgagccgggcccccaaagatctgtggaaggctggatcctgtttgtgaccggggtg
cacgaggaagccacagaggaggatatacacgataagtttggagaatttggggagatcaag
aacatccacctgaatctggaccggaggaccggcttccttaagggctacgcgctggtggaa
tatgagacgtacaaggaagccctggcagccatggaagggttaaacgggcaagacctcatg
gggcagccaatcagcgtagactggggatttgtccgtggcccgcccaaagggaagaggaga
agtgggaggaggaggagccggagcccagaaagaagacgacgttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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