KEGG   Xenopus tropicalis (tropical clawed frog): 779569
Entry
779569            CDS       T01011                                 
Symbol
sox1
Name
(RefSeq) transcription factor Sox-1
  KO
K09267  transcription factor SOX1/3/14/21 (SOX group B)
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:xtr03000]
    779569 (sox1)
Transcription factors [BR:xtr03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    779569 (sox1)
SSDB
Motif
Pfam: HMG_box SOXp HMG_box_2
Other DBs
NCBI-GeneID: 779569
NCBI-ProteinID: NP_001074465
Xenbase: XB-GENE-1018269
UniProt: A2TED3
Position
2:complement(116549825..116552954)
AA seq 401 aa
MYSMMMETDLHSPGVQPPSNTGQTGGGGGNKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLHAAGGGHMGVGLSPGGGGGGTGGVVVQRLESPGSGASAGGYAHMNGWANGAY
PGSVAAAAAAAMMQEAQLAYSQQQQQHPGSGGHHPHHHPHHPHHHPHHHPHHNPTPHPPP
PPPQPMHRYDMSALQYSPLPGAQTYMTASPSGYGALGYSSSQQQHQGSPSSAAVAAAAAA
AAAAAASSGALGALGSLVKSEPSVSPPVSGGGPHNRPPCPGDLREMISMYLPSGGEAGDP
AAAAAAAAAAAAAATSRLHSLPQHYQGAGTGVTGTVPLTHI
NT seq 1206 nt   +upstreamnt  +downstreamnt
atgtacagcatgatgatggagacggacttacactcccccggggtgcagccccctagcaac
acggggcaaactgggggaggagggggcaataaagccaaccaggaccgggtcaagcgaccc
atgaacgcctttatggtatggtccagagggcagaggagaaagatggcccaggagaacccc
aagatgcacaactcggagatcagcaagaggctgggggctgagtggaaagttatgtcggag
gctgagaagagacccttcattgacgaggccaagaggctgcgcgccctgcacatgaaggag
cacccggattataagtaccggccgcggcgcaaaaccaagaccctgctcaagaaggacaag
tactctctagccggggggcttctgcacgctgctggaggaggccacatgggggtcggcctg
agtccgggtggaggaggagggggaacgggaggagtggtggtacaacgcctggagagtccc
gggtcaggcgcttctgccggtggctacgcacatatgaacggctgggccaatggcgcttac
ccgggctctgtagctgctgctgccgctgcagcgatgatgcaagaagctcagcttgcctac
agtcaacagcagcaacagcaccctggcagcgggggccaccacccgcatcatcacccccac
cacccacaccatcacccgcatcaccatccgcaccacaaccctacgccacacccgccaccc
cctccgccccaacccatgcaccgttatgacatgagcgccctgcagtacagcccgctgccc
ggtgcccagacctacatgaccgcttctccctctggctatggggcgctgggctacagctcc
agccaacagcagcaccagggttctccgtcctcggccgcggtggcggcggctgcagctgct
gcagccgccgctgcagcttcatctggtgccctaggggcactgggatccctggtgaaatcc
gaacccagtgtcagtcccccagtgagcggaggtgggccccataaccggccgccctgtccc
ggagatctacgggagatgatcagcatgtacttgcctagtgggggggaagccggggacccg
gccgctgctgcggcagcggcagcagcggcggctgcagcagcaactagtagacttcacagc
ttgccccagcactaccagggggcagggacgggggtaaccggcaccgtgcccctcacacac
atctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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