KEGG   Xenopus tropicalis (tropical clawed frog): 780048
Entry
780048            CDS       T01011                                 
Symbol
grin1
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1 precursor
  KO
K05208  glutamate receptor ionotropic, NMDA 1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04020  Calcium signaling pathway
xtr04080  Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04020 Calcium signaling pathway
    780048 (grin1)
  09133 Signaling molecules and interaction
   04080 Neuroactive ligand-receptor interaction
    780048 (grin1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:xtr04040]
    780048 (grin1)
Ion channels [BR:xtr04040]
 Ligand-gated channels
  Glutamate (ionotropic)
   780048 (grin1)
SSDB
Motif
Pfam: Lig_chan ANF_receptor Lig_chan-Glu_bd SBP_bac_3 Peripla_BP_6 Ion_trans_2 Rap-GAP_dimer DUF6724
Other DBs
NCBI-GeneID: 780048
NCBI-ProteinID: NP_001072593
Xenbase: XB-GENE-494200
UniProt: Q05B24
Position
8:1606495..1657500
AA seq 899 aa
MATMRLFLLAVLFLFSFARAGCDPKIVNIGAVLSTKKHEQIFREAVNQANKRHGTWKIQL
NATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIG
LTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKL
ETLLEEKESKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAMLDM
TGAGYVWLVGEREISGSALRYAPDGIIGLQLINGKNESAHISDAVAVAAQAIHELFEMEN
ITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFANYSIMNLQNRK
LVQVGIFNGSHVIQNDRKIIWPGGETERPQGYQMSTRLKIVTIHQEPFVYVKPTMTDGTC
REEYTINGDPIKKVICNGPNETIPGRPTVPQCCYGFCIDLLIKLAREMNFTYEVHLVADG
KFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILV
KKEIPRSTPDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALT
LSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEE
RITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVR
DNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLNILKSHEN
GFMEELDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKD
ARRKQMQLAFAAVNVWRKNLQDRKSGRAEPDPKKKASFRSITSTLASSFKRRRSSKDTT
NT seq 2700 nt   +upstreamnt  +downstreamnt
atggccactatgcgccttttccttttggctgtactctttctgttctccttcgcccgggcc
ggatgtgaccccaaaatcgttaacatcggggcagtgctgagcaccaagaagcacgagcag
atcttccgggaagctgtaaaccaggcaaataaacgccacggcacctggaagatccagctc
aatgccacctctgtcacccaccgacccaatgccatccagatggctctctccgtgtgtgag
gatctcatctccagccaggtctacgccatattggttagtcaccctcctgcacccacggat
cacctgacgccaacgcctatatcctacacagcaggcttttaccggatcccagtcatcggg
ctgaccactcgcatgtctatatattccgataagagcatccacctctcgttcctacgcacg
gtgcccccctactcccaccaggccttggtttggttcgagatgatgcgcctgttcaactgg
aaccatgtcattctcatcgttagcgacgaccacgagggccgggccgctcagaaaaagctg
gagaccctcttagaggagaaagagtccaaggcagacaaagtcctgcagtttgaacctgga
accaaaaacctgacggccctcctccttgaggccaaggaactggaagccagagtcatcatc
ctctctgccagtgaggacgatgcaacggcggtgtacaaatcggcagcaatgctggacatg
accggcgccggctacgtctggttggtgggagagagggagatatccggaagtgcattgaga
tatgcgcccgatggaattattgggctgcagctgatcaatgggaagaacgagtcggcgcat
ataagcgacgcagtggctgtagcggcccaggcaatacacgagttatttgaaatggaaaac
attaccgaccccccgaggggctgcgttggaaacaccaatatatggaagactggacctctg
ttcaaaagggttctcatgtcctccaaataccccgacggggtaacaggaagaattgagttc
aatgaggacggagacaggaaatttgccaattacagcataatgaacctacagaaccgcaaa
ttggttcaggtcgggattttcaatggcagccatgttatacagaacgacagaaagattatt
tggcccggcggggaaacagagagaccacagggctatcaaatgtccacgaggttgaagata
gttaccatccaccaagaaccgtttgtatatgtgaagccaacaatgactgatggaacgtgc
agggaagaatacaccatcaatggagatcccatcaaaaaagttatttgtaacggtcccaat
gagaccatcccaggtcgcccgactgtaccccagtgctgctacggcttttgcattgacctg
cttatcaaacttgccagagaaatgaacttcacctacgaggttcacttggtagccgacggt
aaattcggcactcaggagcgggtcaataacagcaacaaaaaggagtggaacggcatgatg
ggagagttactgagcggccaagcagacatgatagtcgccccactcaccattaataatgag
cgggctcagtatattgagttctccaagccattcaagtaccaaggactcactatcctcgtg
aaaaaggaaatcccaaggagcactccggactcattcatgcagccgtttcagagcacactc
tggctgttggttggactctcggtgcatgtggtggcggtgatgttatacctactggatcga
ttcagtccgttcgggcgatttaaagtcaacagcgaagaggaagaggaagatgctttgaca
ctgtcttcagccatgtggttttcctggggggtcctcttgaactctggtattggagaaggg
gctcccaggagtttctctgcccgaatccttggcatggtctgggctggattcgctatgatt
attgtagcctcctacactgccaacctggctgccttcctggtgttggacaggccagaggag
aggataactggcattaatgatccccggctgcgcaaccccagtgacaagtttatctacgcc
accgtcaagcaaagctctgtggacatatatttccggagacaggtagaactcagcaccatg
tacagacacatggaaaagcacaactacgagagcgcagcggaagccatacaagctgtgcgg
gacaacaaactgcatgcgtttatatgggactcggccgtgctggagtttgaggcctctcag
aagtgtgaccttgttaccaccggtgaattgttcttccgctccggcttcggcattggcatg
agaaaagacagcccctggaaacagaacgtctcactcaacatcctaaagtcccacgagaac
ggctttatggaagagctggataagacctgggtcaggtaccaggagtgcgattcccgcagc
aatgccccagccacactgacctttgagaacatggcaggggtcttcatgctggtcgctggg
ggcattgttgccggaatctttttgatattcattgagattgcctacaagcggcacaaggat
gcccgcaggaagcagatgcagttggcctttgctgccgttaacgtatggagaaaaaacctg
caggatagaaaaagtggtagagcagaacctgaccctaaaaagaaagcctcttttaggtcc
atcacctccaccctggcctccagcttcaagagacgtaggtcctccaaagacacgacataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (13)   
   UniProt (1)   
   RefSeq(pep) (12)   
DNA sequence (14)   
   RefSeq(nuc) (12)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (45)   

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