KEGG   Xylella taiwanensis: AB672_00765
Entry
AB672_00765       CDS       T05568                                 
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
xtw  Xylella taiwanensis
Pathway
xtw03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:xtw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    AB672_00765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xtw03400]
    AB672_00765
Enzymes [BR:xtw01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     AB672_00765
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     AB672_00765
DNA repair and recombination proteins [BR:xtw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     AB672_00765
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS
Other DBs
NCBI-ProteinID: AXI82605
UniProt: Z9JG65
Position
202337..203152
AA seq 271 aa
MPELPEVETTLRGLLPYLTDQLINCLILRRRTLRWDIPSQIEGRLPGHRITALRRRAKYL
LIDTNAGGSLIIHLGMSGSLRLLAAETPLRPHDHVDIVLTNGRVLRFNDPRRFGCLLWQE
DGQVHPLIQRLGCEPLSDVFNGYYLYQCSRGRHVSVKAFLMDQRIVVGVGNIYATESLFR
AGISPLCEAGKISAQRYQRLAEVVKDILLYAINRGGTTLRDFLDPDGHPGYFKQELFVYG
RQQQPCKHCGSLLRQTTIRQRTTVWCGNCQS
NT seq 816 nt   +upstreamnt  +downstreamnt
atgcctgagcttcccgaagtcgaaaccacattgcgtgggctgttgccatatctgactgat
cagctcatcaattgtcttatcctgcgtaggcgcaccttgcgttgggatatcccttcccag
attgaaggtcgtctgccgggtcatcgcatcactgctttgcgtcgtcgggccaaatacctg
ctgatcgatactaatgcagggggtagcctcatcatccatctcggtatgtccggcagtctg
cgtctgctagcggcagaaacgccgctacgcccacacgatcatgtggacatcgttttaact
aacggtcgtgtgctacgtttcaacgatccccgccgcttcggatgtttactatggcaagaa
gatggacaagtgcatcctctcatccagcgccttggctgcgaaccactctcagatgttttc
aatggctattatctttaccagtgtagccgtggtcgccatgtgtccgtcaaagctttcctc
atggaccaacgtatcgtggtcggtgtcggcaatatatatgccactgaaagcttgttccgc
gccggtatcagccccctatgcgaagccggcaaaatatctgcccaacgttatcagcgcttg
gctgaagtggttaaggatattcttctctatgcaatcaaccgtggaggaactaccctgcga
gatttcctcgatcccgatgggcaccctggctacttcaagcaggaattgtttgtctacggt
cgtcagcaacagccctgtaagcattgtggaagccttttgcgccaaacaactatcagacag
cgtactaccgtctggtgtggcaattgccaatcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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