KEGG   Xylella taiwanensis: AB672_01155
Entry
AB672_01155       CDS       T05568                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
xtw  Xylella taiwanensis
Pathway
xtw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xtw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AB672_01155
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtw03019]
    AB672_01155
   03009 Ribosome biogenesis [BR:xtw03009]
    AB672_01155
Enzymes [BR:xtw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AB672_01155
Messenger RNA biogenesis [BR:xtw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AB672_01155
Ribosome biogenesis [BR:xtw03009]
 Prokaryotic type
  rRNA helicases
   AB672_01155
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 AAA_30 Flavi_DEAD P-loop_SecA UvrA_inter
Other DBs
NCBI-ProteinID: AXI82675
UniProt: Z9JJZ5
Position
complement(306491..308314)
AA seq 607 aa
MSNPSPTPLLFADLGLSDAVMQAVTKVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPLLTRTALTQTKPQVLVLAPTRELAIQVAEAFQRYAAAISGFRVLPVYGGQSYGQ
QLAALKRGVHVVVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEAVLQKL
PVSRQVALFSATMPPQIRRIAQTYLHDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALT
RILEVETFDAMIIFVRTKAATEELAEKLQARGLAAAAINGDMQQMQRERTIHQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGML
RQIERATHQPIEAMQLPSVDAVNDTRVAKFFGRISNALVAGDEIDFYRKLLQRFESEHNV
PAIEIAAALARLLQGDSPFLLSAPARPPRERNESSEHGKRSSSFKRPERPNHTEHAKRPQ
RTAASRNTPEFGMESYRIEVGRIHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSILDL
PAEMPREILQHLKKVWVSGQQLQMRRIDATETIAPVREFKPKPVGAGKFTPRPQHNKSAK
PRPPYGG
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgtcaaacccatcccctacgccgctgctgtttgcagatctcggtctctctgacgctgtc
atgcaagccgtgaccaaagtcggttatgaaactccgtcgcccatccaggcggcaaccatc
ccggcattgctggctggacgcgacgtgctcggccaagcgcagaccggtaccggcaagacc
gccgcattcgcgctcccgttactgacacgcaccgcgctgactcagaccaagccgcaagtg
ctcgtgctggcacctacccgcgagctggccatccaagtcgccgaggcattccagcgctat
gccgcagcgatctctggcttccgcgtgctaccggtgtacggcggccaatcctatggccag
caactggccgcactgaaacgcggtgtgcatgtggtcgtcggcactcctggccgggtgatc
gatcacctggagcgcggcaccctggatctgtccgaactgaaaacgctggtgctcgacgaa
gccgatgaaatgctgcgtatgggtttcatcgaagacgttgaagccgtgctacagaagttg
cccgtgtcacgtcaggtagcgctgttttcggccaccatgccgccacagatccgccgcatc
gcgcaaacctatctacacgacccgatcgaagtcactatcgccactaaaaccacgaccgcg
gccaatatccggcaacgttactggtgggtgagcggcctgcacaagctagacgcgctcaca
cgcattcttgaggtggagacgttcgacgcgatgatcatcttcgtgcgcactaaagccgcc
accgaagaattagccgagaaattgcaagcacgtggcttggccgccgcagcgatcaacggc
gacatgcaacagatgcaacgcgagcgcaccattcaccaactcaaggatggcaagctcgat
atcctcgttgccaccgacgtagccgcacgcggtttggacgtggaacgtatcagccacgtg
ctgaactacgacattccttacgacgttgagagttacgtccatcgcatcggacgcactggc
cgtgccggccgcagcggcgaagcgattctcttcgtgacgccacgcgaaaaaggcatgctg
cgccagatcgaacgtgccactcatcaaccgattgaagccatgcaactgcccagcgtggat
gcagtcaacgacacccgcgtggccaaatttttcgggcgcatcagcaatgctctggtagcc
ggcgatgaaatcgacttctaccgcaagctgctgcaacgtttcgaaagtgaacacaatgta
ccggctatcgagatcgcggccgccctggcgcgactgcttcagggggatagcccgttcctg
ttgagtgcgccggcacgccccccacgcgagcgcaacgagtcatccgagcatggcaaacgc
tcctcatcgttcaagcgtccagagcgccccaaccacactgaacacgccaagcgtccccag
cgcaccgcagcatcacgcaacaccccggagttcggtatggagtcttaccggatcgaagtc
ggccgcatacacggcgtgaagccagccaatatcgtcggcgccattgccaacgaagctgga
ttggagagccgctacattggccggatcgacatccgtgacgaccattcgattctggatctc
cccgcagagatgccacgcgagatcctgcagcacctcaagaaggtctgggtctccggacag
caactccaaatgcgtcggatcgacgcaaccgaaacaatcgcgcctgtccgagaattcaag
cccaaaccagttggcgctggtaaattcacgcccaggccacaacacaacaaatcagccaaa
ccaagaccaccatacggcggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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