KEGG   Xylella taiwanensis: AB672_10055
Entry
AB672_10055       CDS       T05568                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
xtw  Xylella taiwanensis
Pathway
xtw03030  DNA replication
xtw03410  Base excision repair
xtw03420  Nucleotide excision repair
xtw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xtw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AB672_10055
   03410 Base excision repair
    AB672_10055
   03420 Nucleotide excision repair
    AB672_10055
   03430 Mismatch repair
    AB672_10055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xtw03032]
    AB672_10055
   03400 DNA repair and recombination proteins [BR:xtw03400]
    AB672_10055
Enzymes [BR:xtw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AB672_10055
DNA replication proteins [BR:xtw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AB672_10055
DNA repair and recombination proteins [BR:xtw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AB672_10055
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AB672_10055
   MMR (mismatch excision repair)
    DNA ligase
     AB672_10055
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AB672_10055
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT
Other DBs
NCBI-ProteinID: AXI84252
UniProt: Z9JHC0
Position
complement(2371941..2374436)
AA seq 831 aa
MIPLDPAQRAAELRRRLDEASYHYHVLDQPRIPDVDYDRMLRELDALEAAYPEVATPDSP
TQRVGHTVVSAFAEVRHAVPMLSLGNAFNDEEVTEFVRRITGRLGGTAPAFSAEPKLDGL
AISLRYENGVFIQGATRGDGTTGEDVTANLRTVRAIPLRLQGDRWPRVLEVRGEVYMPRP
DFDAYNIQARLHGWKVLANPRNGAAGSLRQLDPKVTAQRPLSFYVYGVGEVADATPFSRH
SEMLAHLRAWGFPVSSLVELVYGSEGLLDYYRRMGAIRDTLPFDIDGVVYKLDDLAGQRD
MGFVARAPRWAIAHKFPAQEQATTVEAIEIQIGRTGAATPVARLTPVQVAGVTVTSATLH
NADQIARLDVRIGDTVMVRRAGDVIPEVVGVMAENRLPDAAEWRMPVACPVCGSEIVREA
GAAVWRCSGELACPAQRKEAIRHFVSRRAMDVEGLGGKFIELLVDANVVHGVADLYHLNL
DQLLRLRLVTSAETPHTFLRAAREHVAGVHYQQLEEVLRELGVDLSGHDAVPQYWQVEVL
RAQWPHFDWNRSKIATKWAENLIAAIDRSRETTLERFLFALGIEHVGESTAKALAQWFGD
LSLIRQLPWPLFKCVPDIGAEVARAIGHFMDQPANQQAIDDLLARGVRITDMHPPSSKLR
DALTLANVLQHLDIPKITPLRAVQLTAIAPSLPLLTETSLDVLVQAGVPQAVAQSLTDWF
QCPGNVPLVARVQRLCDALLARLPVADIARIGPLDGQSVVLTGTLASLTREAARARLEML
GARMASSVSQKTSFVVAGEGAGSKLDKARALHVEIWDELRLLAFLEKHGEH
NT seq 2496 nt   +upstreamnt  +downstreamnt
atgatccccctggatcctgcccagcgtgccgccgagttgcgtcgtcgccttgacgaggcc
agctatcactaccacgtactcgatcagcctcgaatcccggacgttgactacgaccggatg
ctgcgtgagctggatgcgctcgaagcagcctatccagaggtggcgactcctgattcacca
acccaacgtgttggtcacactgttgtcagcgcgtttgccgaagtgcgccatgccgtgccg
atgctgtccctgggcaatgcgttcaacgatgaggaagtgactgagttcgtgcgccgtatt
accgggcgtctggggggaacggcgcctgcgttttcggccgagcctaagctcgatggcttg
gcgatcagcctgcgctacgagaacggtgtgttcatccagggggccacccgcggcgatggc
accacgggcgaagatgtcacggccaacctgcgtaccgtgcgtgctatcccgttgcgcttg
caaggtgaccgctggccgcgtgtgttggaggtgcgcggtgaggtgtatatgccgcgtcct
gacttcgatgcctacaacattcaggcccgtctgcacgggtggaaggtgctggccaacccg
cgcaatggtgcggcaggctcgttgcggcagctcgatccaaaagtcaccgcgcagcgccca
ctgagcttctatgtctatggtgtgggcgaagtagctgacgccacaccatttagccgccac
tcggagatgttggcacacctgcgtgcgtgggggtttccggtctcctcactggtggagttg
gtgtacggcagtgaggggctactcgattattaccgccgtatgggcgccatacgcgatacg
ttgccgtttgatatcgatggtgtggtctataagctcgacgatttggctggtcagcgcgac
atgggttttgtcgcgcgtgccccgcgttgggcgattgcccacaaattcccggcccaggaa
caagcgaccaccgtcgaggcgatcgagatccagatcggccgcacgggcgcggcgaccccc
gtggcacgactgacgccggtacaggtggctggggtcaccgtcaccagcgccacactgcat
aacgcagaccagatcgcgcgcttggatgtgcgcatcggtgacaccgtgatggtgcgccgt
gccggcgatgtgattcctgaggtggttggagtcatggccgagaaccgtcttcccgatgct
gcagagtggcgcatgcccgtggcgtgtccagtatgtggttcggagattgtccgcgaggca
ggcgcagcggtatggcgttgctccggtgaactggcctgcccggcacaacgcaaagaggcc
atccgccatttcgtctcgcgccgtgcgatggatgtggaaggacttggtgggaagttcatt
gagttgctggttgatgccaacgttgtacacggcgtggccgacctgtatcacctgaacttg
gatcaactgctgcggttgcgtttggtgacgagtgccgaaacgccgcacacgtttttgcgc
gcagcgcgcgagcatgtggcgggcgtgcattaccagcagttggaagaggtgctgcgtgag
ctgggcgtggatttgtccggtcacgacgcggtgccgcagtactggcaggtcgaggtgttg
cgtgcccaatggccgcacttcgattggaaccgcagcaagattgcgacgaagtgggcggag
aatttgatcgcggcgattgatcggtcacgtgagaccaccttggagcgctttctgtttgcg
cttggcatcgagcatgtcggcgaaagcacagcgaaggcgctggcgcagtggttcggagac
ctgtcactgattcgtcagttgccgtggccattgttcaagtgcgtgccggatatcggtgcc
gaggtggcacgtgcgatcggccactttatggaccagcctgccaaccagcaggcgatcgac
gacctgttggcgcgtggcgtgcgtatcaccgatatgcacccgccctcctcgaagttgcgc
gatgcactgaccctggccaacgtgttgcagcacttggacattcccaagatcaccccacta
cgcgcggttcagttgaccgcgatcgcaccctcgctgccattgttgaccgagaccagtctc
gatgtgctggttcaggcgggtgtgccgcaggccgttgctcaatcgttgaccgattggttt
cagtgtcctgggaacgtgccgttggtcgcgcgcgtacaacgcctgtgtgacgcattactg
gcgcgattgccagtggcggatattgctcggattggcccgctcgacggccagagcgtggta
ctgacggggacattagcgtcactgacccgcgaagccgcccgtgcgcggctagagatgttg
ggagccaggatggccagcagcgtgtcgcagaaaacgagcttcgtcgttgctggagaaggg
gccggttccaaactcgacaaagctcgggccttacacgtggaaatctgggatgaactccgt
ctgctcgcctttctggagaaacatggtgagcactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

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