KEGG T05388: C7V42

Xanthomonas vasicola pv. vasculorum: C7V42_20270

Entry

C7V42_20270       CDS       T05388

Name

(GenBank) RtcB family protein

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

xva Xanthomonas vasicola pv. vasculorum

Brite

KEGG Orthology (KO) [BR:xva00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:xva03016]
    C7V42_20270
Enzymes [BR:xva01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     C7V42_20270
Transfer RNA biogenesis [BR:xva03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    C7V42_20270
Prokaryotic type
   tRNA splicing ligases
    C7V42_20270

SSDB

Motif

Pfam:

RtcB Hexapep Gam

Other DBs

NCBI-ProteinID:

AVQ08584

Position

4448861..4450090

AA seq 409 aa
MTTMSTSQHFEFLHAEGSTPIKGWVRGVPLEEQAHAQLRNIAAVPFVGPWVAVMPDVHLG
KGATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRANDLPDNLAQLRSSIERSVPVGNG
RGGEHRKLPDSIETRIAQSGLMQRLDAIKQQHKRIRTDKLDCQIGTLGGGNHFIEICLDE
TDAVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMQGERLFDEYVE
AVSWAQDYARENREAMMARVLAEMRHRLPKFQLEKLTVNCHHNYVQKETHAGEELLITRK
GAVSARADELGIIPGSMGTRSYIVRGLGNADSFHSCSHGAGRVMSRTAARAQITLAQHRE
ATAHVECRKDAAVIDESPAAYKSIDAVMAAQQDLVEVLHTLRQVVCIKG

NT seq 1230 nt +upstreamnt +downstreamnt
atgacaacaatgagtacttcacaacactttgaatttctgcatgccgaaggcagcaccccg
atcaagggctgggtgcgcggcgtgccactggaagagcaggcgcatgcgcagctgcgcaat
attgcagcagtgccgtttgtcggtccgtgggtcgcagtgatgcccgatgtgcatctgggt
aagggtgcaaccgtgggctcggtgattccgacccgtggcgccatcatcccggcggcggtg
ggcgtggacatcggctgcggcatggccgcggtacgtaccacgctgcgtgccaacgacctg
cccgacaacctggcgcagttgcgctccagcatcgagcgtagcgtgccggtgggcaacggt
cgtggcggcgagcatcgcaaactgccggacagcatcgaaacccgcattgcgcagtcgggg
ttgatgcaacgtctggacgcgatcaagcagcagcacaagcgcatccgcaccgacaagctg
gactgccagatcggcacgctgggcggcggcaatcacttcatcgagatctgtctggacgaa
accgatgcagtgtgggtgatgctgcacagcggttcgcgtggcaccggcaacctgatcggc
acctacttcatcgagcgtgcgcgtgagcaactggcgcatcgtgtgttgggctttcatctg
cccgacaaggacctggcctttttcatgcagggtgagcgcttgttcgacgagtacgtcgaa
gcggtgtcgtgggcgcaggattacgcccgcgaaaatcgcgaggcgatgatggcgcgtgtg
ctggctgagatgcgtcatcggttgccgaagttccagctagaaaagttgacagtcaattgc
caccacaactatgtgcagaaggagacgcacgctggcgaggaattgttgatcacgcgtaag
ggcgcggtgagcgcacgggccgatgagctgggtatcattcccggcagcatgggcacacgc
agctacatcgtgcgcgggctgggcaacgccgacagtttccatagctgtagccacggcgca
gggcgggtgatgagcagaacagctgcacgtgcgcagatcacgctggcgcagcaccgcgaa
gccaccgcacatgtggaatgccgtaaggatgcagcagtgatcgacgagtcgcctgcggcg
tacaagtcgatcgatgcggtaatggccgcgcagcaggatctggtcgaagtgctgcacacc
ttgcgccaggtggtgtgtatcaaggggtag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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