KEGG   Yersinia aldovae: AT01_2274
Entry
AT01_2274         CDS       T03605                                 
Symbol
uvrD
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
yal  Yersinia aldovae
Pathway
yal03420  Nucleotide excision repair
yal03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:yal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AT01_2274 (uvrD)
   03430 Mismatch repair
    AT01_2274 (uvrD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:yal03400]
    AT01_2274 (uvrD)
Enzymes [BR:yal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AT01_2274 (uvrD)
DNA repair and recombination proteins [BR:yal03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AT01_2274 (uvrD)
   MMR (mismatch excision repair)
    Other MMR factors
     AT01_2274 (uvrD)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PcrA_UvrD_tudor UvrD_C_2 AAA_30 Viral_helicase1 AAA_22 DUF4391 PhoH AAA_11
Other DBs
NCBI-ProteinID: AJJ62591
Position
complement(2456859..2459021)
AA seq 720 aa
MDVSDLLDSLNEKQREAVAAPRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAV
TFTNKAAAEMRHRIEHLIGTSQGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQL
RLLKRLVKALNLDEKQWPPRQAMWYINGKKDEGLRPKHIESYGNPIEATWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGDR
SNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAETIRLEQNYRSTSNILKAANTLIANN
DGRMGKNLWTEGAEGEPISLYCAFNELDESRFVVNRIKAWQDNGGALNDCAILYRSNAQS
RVLEEALLQTAMPYRIYGGQRFFERQEIKDSLAYLRLISNRNDDAAFERVVNTPTRGIGD
RTLDVIRQTARDRQLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLANETADMPLHVQ
TDRVIRDSGLWSMYEQEKGEKGQARVENLEELVTATRQYSYQDEDQDLMPLQAFLSHAAL
EAGEGQANAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMALDESGRLEEERRLAY
VGVTRAMQKLTLCYAESRRLYGKEVNHRPSRFIGELPQECVEEVRLRATVSRPVNHRRMG
TPMNENDSGFSLGQRVRHPKFGEGTVVNLEGSGEHSRLQIAFPGEGIKWLVAAYARLEAV
NT seq 2163 nt   +upstreamnt  +downstreamnt
atggacgtttctgatctgctcgacagcctgaatgaaaaacaacgcgaagccgtggccgcg
ccacgctgcaacctgttggtactggccggtgcaggcagtggcaaaacccgcgtgctggtt
caccgtattgcctggttgttgtcagtagaaaacgcctctccttactcgattatcgcggtg
acttttaccaataaggcggcagcagagatgcgccaccgtattgaacacctgattggcacc
agtcagggcgggatgtggattggcactttccacggactggcacatcgcttgctgcgcgct
caccatatggatgccaatctgccgcaggatttccaaattctggacagcgacgaccaactg
cggctattaaaacgcttggtcaaggcactgaatctggatgagaagcagtggccgccgcgt
caggcgatgtggtacatcaacggtaagaaagatgaaggtttgcgtcctaagcatatcgag
agctacggtaacccgatagaagccacttggctgcgtatctatcaggcttatcaggaagcc
tgtgaccgtgccgggttggtggatttcgccgagctattactgcgcgcccatgagctgtgg
ctcaacaaaccgcacattctgaatcattatcgcgagcgctttaccaacattctggtggat
gagttccaggataccaataacatccaatatgcatggattcgcctgctggcaggggatcgc
tctaatgtgatgatcgtcggcgacgatgaccagtcaatttatggctggcgcggggcgcag
gtggagaatatccagcgcttcctgaaagattttcccggcgctgaaaccatccgattggaa
caaaattatcgttcgaccagcaacatcctgaaagccgccaataccttgattgccaataac
gatgggcggatgggtaaaaacctgtggaccgagggcgctgagggcgaacctatctcactc
tattgcgcatttaacgagttagatgaatcgcgttttgtggttaaccgcatcaaagcctgg
caggacaacggtggcgcgctaaatgattgcgccattttgtatcgcagcaacgcccaatcg
cgggtgttggaagaggctctgctgcaaaccgcgatgccgtatcggatttatggcggtcag
cgcttcttcgaacggcaggaaatcaaagactcactggcttatctacgactgatttccaac
cgcaatgatgatgcggcttttgagcgggtggtgaataccccaacccgtggtatcggtgat
cgcacgctggatgtgattcgccaaaccgcgcgtgatcgccaattaaccttatggcagtca
acccgcgccatgttgcaggaaaaggtgctggcaggccgtgctgcctctgcgttgcaacgt
tttgtcgagctggtggactcccttgccaatgaaaccgccgatatgccgctgcacgtccaa
actgaccgcgtgattcgtgattcgggcttatggtcgatgtacgaacaggaaaagggcgaa
aaaggtcaggcgcgggtcgaaaaccttgaagagctggttacggcaacgcgccaatacagc
tatcaggatgaagatcaggatttgatgccgctacaggcgttcctctctcatgccgcactg
gaggcgggtgaagggcaggctaatgcttatcaggatgcggtgcaactgatgacacttcat
tctgcgaaaggcttggagttcccgcaggtatttatcgtgggaatggaagagggcatgttc
ccaagccagatggctctggatgaaagcgggcgtctggaagaagaacggcggctggcttat
gtcggtgtcacccgtgcgatgcagaaactgacactctgttatgccgagagtcgtcgtctg
tacggtaaagaagtgaatcatcggccttcgcgttttattggtgagctaccgcaggagtgt
gttgaagaagtgcgactgcgtgccacggtttcccgcccggtgaatcaccgcagaatgggc
acgccgatgaacgaaaatgacagcggcttttcactggggcagcgggtgcgccatccgaaa
tttggcgaaggcacggtagttaatctcgaaggcagcggcgaacatagccgattgcagatt
gctttccccggcgaggggattaagtggttagttgcggcttacgcacggctggaggctgtc
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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