KEGG   Yersinia canariae: F0T03_06765
Entry
F0T03_06765       CDS       T06446                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
yca  Yersinia canariae
Pathway
yca03030  DNA replication
yca03410  Base excision repair
yca03420  Nucleotide excision repair
yca03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:yca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    F0T03_06765 (ligA)
   03410 Base excision repair
    F0T03_06765 (ligA)
   03420 Nucleotide excision repair
    F0T03_06765 (ligA)
   03430 Mismatch repair
    F0T03_06765 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yca03032]
    F0T03_06765 (ligA)
   03400 DNA repair and recombination proteins [BR:yca03400]
    F0T03_06765 (ligA)
Enzymes [BR:yca01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     F0T03_06765 (ligA)
DNA replication proteins [BR:yca03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     F0T03_06765 (ligA)
DNA repair and recombination proteins [BR:yca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     F0T03_06765 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     F0T03_06765 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     F0T03_06765 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      F0T03_06765 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD HHH PTCB-BRCT 5_3_exonuc BRCT_2
Other DBs
NCBI-ProteinID: QHB31893
UniProt: A0A857EWV0
Position
1422227..1424239
AA seq 670 aa
MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLA
VSLLYEEGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPLRVEVRGEVFMPQAG
FEQLNEEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHI
QRLMTFKSWGLPVSERVKLCTGSEQVIAFYRQIEQDRAGLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITFPDHCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVEGLGDKIIEQLVEKQYVENPADLFTLTAG
KLTGLDRMGPKSAQNLIVALEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLENLRA
ADIEALKSVPDVGEVVAKHVLNFLGEEHNQKVIEALEKVISWPEPQQIVVEEIDSPFAGK
TVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVID
EAEMIRLLGE
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggaatcaataattcagcaaattaatcaactaagaacctcactgcgccatcacgaacat
caataccatgtgttggatgcaccagagatccctgatgctgaatatgaccgcctgatgcag
caattgcgcgatttggaagcacaacaccctgaactgattaccaatgattcgccgacacag
cgagtgggagccgccccgcttgatgcatttgaacaggttaaacatgaagttccgatgctc
tctctggataacgttttcgatgaagaaagttatctggcttttgacaaaagagtgcatgac
cggctgaaaacggcggagccgctgaccttctgctgcgagctaaaactcgatggattggca
gtgagtttattgtatgaagagggcgaactggtcagggcggcaacccgtggtgatggcaca
actggcgagaatattaccgccaatgtgcgcactatccgtgcaattccgctgcgtttacaa
ggggataatatcccactgcgagtcgaggttcgtggcgaagtctttatgccacaagcgggt
tttgagcaactcaatgaagaggcgcgccgcaaaggggggaaaattttcgccaacccacgt
aatgcggcggcgggttcattgcgccagcttgacccgcgtattacggctaaacggccctta
actttcttctgctatggcgtcggtttgctggagggcggcgaacttccccgcagtcatatt
cagcgcctaatgacatttaagtcctggggcttaccggtcagtgaacgggtcaaattatgc
acgggcagcgagcaggtgattgctttctatcgtcagattgaacaagaccgtgctggttta
ggttttgatattgatggtgtggtcattaaagttgattcgctcgacttacaagagcaattg
ggctttgtggcgcgagcacctcgctgggcaaccgcatttaaattcccggcacaagagcag
ataacccaggtccgtgaagttgaatttcaagttgggcgtactggtgcaattacgcctgtc
gcgcggctggagccggtacaggtggcgggggtgatagtcagcaatgccaccttgcacaat
gctgatgaaatcgagcgcttaggtttacgcattggtgataccgtgattgtccgccgtgcc
ggggatgtgattccacaggtggtcggtgtggtaatggaacaacgcccacaggatgctaaa
gaaattactttccctgatcactgcccggtgtgcggctctgatattgagcgggttgagggc
gaagcggtcgcccgctgtaccggtgggttattctgcgcggcgcaacgtaaagaagcgcta
aagcattttgtctcccgccgggcgctggatgttgagggtttgggtgataaaattatcgag
caactggtggaaaaacagtatgttgaaaacccggctgacttattcacattgaccgcgggt
aagctgacggggctggatcggatggggccaaagtcggcccaaaacctgatagtggcgctg
gaaaaggcgaaacagacaacttttgcgcgcttcctctatgcgctgggcattcgcgaagtc
ggtgaggcaactgccgctaatttggccgctcacttccgtaatctggaaaatctgcgcgca
gctgatattgaagcattaaaaagtgtgccagatgtcggcgaagtggtggcaaaacatgta
cttaacttccttggtgaagaacacaatcagaaggtgattgaagcactggagaaagtgatc
agttggcctgagccgcagcaaattgttgtcgaagagatagacagcccattcgcgggcaaa
actgtggttctgacaggctcgctgaccatcctttcacgggacgaagccaaagatcgcctg
actgcattgggggcaaaagtcagtggcagtgtttccaaaaaaactgatctggtgattgcg
ggagaagctgcaggttcaaaactggccaaagcgcaggaactggggataacagtcattgat
gaggctgaaatgatccgtttgcttggtgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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