KEGG   Yersinia enterocolitica (type O 5) YE53/03: YE5303_43541
Entry
YE5303_43541      CDS       T03739                                 
Symbol
groN
Name
(GenBank) DNA-directed RNA polymerase beta chain
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
yee  Yersinia enterocolitica (type O:5) YE53/03
Pathway
yee03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:yee00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    YE5303_43541 (groN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:yee03021]
    YE5303_43541 (groN)
   03400 DNA repair and recombination proteins [BR:yee03400]
    YE5303_43541 (groN)
Enzymes [BR:yee01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     YE5303_43541 (groN)
Transcription machinery [BR:yee03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     YE5303_43541 (groN)
DNA repair and recombination proteins [BR:yee03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      YE5303_43541 (groN)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 Cas_Cas2CT1978
Other DBs
NCBI-ProteinID: CCQ38691
Position
335919..339947
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTAQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEYIAGKVVAKD
YIDENTGELICAANMELSLDLLAKLSQAGHKQIETLFTNDLDHGAYISETLRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGIEADKLSKLPRDRWLELGLTDEDKQNQLEQLAEQYDE
MKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAK
LREFIQKAYDLGDSVCQKVDLSTFTDDEVLRLAENLKKGMPIATPVFDGATEKEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggacataccttatctcctttctatccaacttgactcgttccagaaatttatcgag
caagatcctgaaggacagtacggcctggaagcagcattccgttctgttttcccaatccag
agctacagcggcaattcggagctgcaatacgttagctaccgtcttggtgagccagtattt
gacgtcaaagagtgccagatccgtggtgtgacttattccgcaccgctgcgcgtaaaactg
cgcctggtcatctatgagcgcgaagccccggaaggtacggtcaaagacatcaaagaacaa
gaagtctacatgggtgaaattccactcatgaccgaaaacggtacctttgtcattaatggt
actgagagggttatcgtatctcagctgcatcgtagtcctggcgtattctttgacagtgat
aagggtaaaacccattcatcgggtaaagtgctgtataacgcacgtatcatcccttaccgc
ggttcatggttagatttcgagtttgacccgaaagacaacctgtttgtccgtattgaccgt
cgtcgtaagctgccggcaaccatcattctgcgtgcattgaatttcaccactgcacagatc
ctggatctgttctttgaaaaagtggtctttgagattcgtgacaacaagctgcagatggaa
ttggttcctgagcgcctgcgcggtgaaacggcatcctttgatattgaagcgaatggcaaa
gtttacgtcgagaaagctcgtcgtattactgctcgccatattcgccagcttgaaaaagac
ggcattgatcgcatcgaagttccggttgaatacattgccggtaaagtggtcgctaaagac
tacatcgatgagaacactggtgagcttatctgtgcagccaacatggagctgtcactagat
ttgctggctaaactgagtcaagccggtcacaagcaaatcgaaacattgttcaccaacgac
ttggatcacggtgcttatatctccgagaccctgcgtgttgacccaaccagcgatcgtctg
agtgctttggttgagatttaccgcatgatgcgtcctggtgagccaccaacacgtgaagca
gctgaaaacctgtttgagaacctgttcttctctgaagaccgctatgatttgtcagcagtt
ggccggatgaagttcaaccgttcactgctgcgcgacgagatcgaaggttccggtatcctg
agcaaagaagacatcactgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacttaggcaaccgtcgtattcgttccgttggtgaaatggct
gaaaaccagttccgtgttggtctggttcgtgttgagcgtgcagttaaagagcgtttgtct
ctgggcgacctcgacacactgatgcctcaggacatgatcaacgccaagcctatttcggct
gcggtgaaagagttctttggttccagccagttgtcacaatttatggaccagaacaacccg
ttgtctgagattacgcataaacgccgtatctctgcattgggcccgggcggtttgacccgt
gaacgtgctggctttgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgccagaaggtccaaacatcggtctgatcaactccttgtccgtgtacgcacag
accaacgagtatggtttcctggaaaccccttatcgtcgcgtgcgcgatggtgtggtgacc
gatgaaattaactatctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggacgaagacggccgcttcatcgaagacttggtcacttgtcgtagcaaaggc
gaatcaagcctgttcagccgcgatcaagttgactacatggacgtttccactcaacaggtg
gtgtccgttggtgcttctctgattccattcctggaacacgatgacgccaaccgcgccttg
atgggtgcgaacatgcaacgtcaggcagtgcctactctgcgtgctgataagccgttggtg
ggtactggtatggaacgtgcggtagcggttgactcaggggtaacctctgtagccaaacgt
ggcggtaccgttcagtacgtagatgcatcccgtatcgtgattaaagttaacgaagacgag
atgtatccgggcgaagcaggtattgatatttataacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccgtgtgtgaatctgggtgagccaatcgagcgcggt
gacgtgctggcagatggcccatcgacagacctgggcgaactggcattgggtcagaacatg
cgtgtagcgttcatgccttggaacggttacaacttcgaagactccatcttggtctccgaa
cgcgtggtgcaagaagatcgcttcacaactatccacattcaggaactggcatgtgtgtct
cgtgacaccaagctggggccagaagagatcactgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtgtatatcggtgctgaagtgactggcggc
gacattctggttggtaaggtaacacctaaaggtgaaacccaactgaccccagaagagaag
ctgttacgtgcgatcttcggtgagaaagcgtctgatgttaaagactcttctctgcgtgtt
ccaaacggtgtttccggtacggttatcgatgtacaagtctttactcgcgacggcgtagaa
aaagacaaacgtgcattggaaatcgaagagatgcaactgaagcaggctaagaaagacctg
acggaagagttgcagatcctggaagcgggcttgtttgcacgtatccatgcagtactggtt
tctggtggcatcgaagctgacaagctgagcaaattaccacgtgaccgctggctggaactt
ggcctgactgacgaagacaagcaaaaccagctggaacagttggcagagcaatacgacgaa
atgaaatccgaattcgagaagaagatggatgccaagcgtcgtaagatcacccaaggtgat
gatttagcaccaggcgtgctgaagatcgtcaaggtgtatctggcggttaaacgtcagatt
caaccgggtgacaagatggccggtcgtcacggtaacaaaggtgttatctctaagattaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgttctgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagattttggaaacccacttagggatggca
gcgaaaggcatcggcgagaaaattaacgccatgctgaaaaagcaggaagaagttgccaaa
ctgcgtgagttcatccagaaagcctacgatctgggcgatagtgtttgtcagaaagttgat
ctgagcaccttcaccgatgacgaagtactgcgtctggctgagaacctgaaaaaaggtatg
ccaatcgcaacaccagtcttcgatggtgcgacagagaaagaaatcaaggaactgttacag
ctgggtggcctgccaacttctggtcagattactctgtttgacggccgtaccggcgagcaa
ttcgaacgtcaggttactgtcggctacatgtacatgctgaaactgaaccacttggttgat
gacaagatgcatgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgttggaagct
tatggcgccgcgtacacattgcaggaaatgcttaccgtcaagtccgacgatgtaaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccgtatggaaccaggcatgccg
gagtccttcaacgtattgttgaaagaaatccgctcgctgggcatcaatatcgagctggaa
gaagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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