KEGG   Yersinia enterocolitica LC20: LC20_05222
Entry
LC20_05222        CDS       T03179                                 
Name
(GenBank) NAD-dependent DNA ligase LigB
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
yel  Yersinia enterocolitica LC20
Pathway
yel03030  DNA replication
yel03410  Base excision repair
yel03420  Nucleotide excision repair
yel03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:yel00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LC20_05222
   03410 Base excision repair
    LC20_05222
   03420 Nucleotide excision repair
    LC20_05222
   03430 Mismatch repair
    LC20_05222
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yel03032]
    LC20_05222
   03400 DNA repair and recombination proteins [BR:yel03400]
    LC20_05222
Enzymes [BR:yel01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LC20_05222
DNA replication proteins [BR:yel03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LC20_05222
DNA repair and recombination proteins [BR:yel03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LC20_05222
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LC20_05222
   MMR (mismatch excision repair)
    DNA ligase
     LC20_05222
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LC20_05222
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH DUF3701 HHH_2 HHH_5 RNA_ligase
Other DBs
NCBI-ProteinID: AHM76473
UniProt: A0A7U4GJ03
Position
complement(4626606..4628300)
AA seq 564 aa
MCKKLKILSLLIVGFINWNANAGPICPEWPEERMSGEINLLEKQLRQWDVAYHQQGISPL
SDDIYDQLQDKLHGWRSCHGLPDKTNNTLIPGNGKTPHPIAHTGLKKLKDETALIDWISR
RKNLWVQPKIDGVAVTLVYQTGKLTQVLSRGNGVKGQNWTDKAPLISAIPQYIATAPPLL
TLQGELFLQMEGHQQAKSGGVNARASVAGALMRKSTSPLLTKLGIFIWAWPDGPKDMVEK
TRLLQEMGFPLTAYYSKPVTTASEVIHWRKLWFQTPLPFVTDGVVIRQEEEPAGRYWQAM
PGNWSVAWKYRPPQQLTEIKDIHFTVGRTGKITTILQVTPVKIDDKWIRRVNIGSVSRWK
KWNIIPGDQVIITLAGQGIPRLDEVIWRVSQRHKFTPPAVDTFHHLSCFSRLPVECEPQF
LSRLVWLSGANGLDMQGVGSGLWRDLVHYGLINDLVGWLSLSVEQIAAVPGIGQGRAEKI
YQQFQRTRQQPFSKWLQALGFPLAISVDSPWRSLQQKSSAEWRLISGVGPIRANQINHFL
HHPEVQAMVDFLSQQGIAGFRPEE
NT seq 1695 nt   +upstreamnt  +downstreamnt
atgtgcaaaaaattgaaaatactaagcttgctgattgtcggttttatcaattggaatgct
aacgcggggcctatttgccctgaatggccagaagaaagaatgtcgggcgaaattaatcta
ttggaaaagcagctacgtcagtgggatgtagcttatcaccagcaaggtattagcccgctt
tcagatgatatttacgaccaattgcaggataaattacatggatggcgatcatgccatggc
ttacccgataaaacgaataacacactgataccgggtaacggaaagacacctcatcctatt
gcccacactggattaaaaaaacttaaagatgaaactgcacttattgattggatatcaagg
cggaaaaatctatgggtgcaacccaaaatagacggtgtggcggtcactctggtgtatcag
accggaaaattgacccaagtgttaagccgaggtaatggtgtgaaaggccaaaattggacg
gataaagcgccacttatttctgctattcctcaatatattgccactgccccgcctttgtta
actctgcaaggagaattattcctacaaatggagggccaccaacaagcaaaatcaggaggt
gttaatgccagagcatccgttgcaggtgccctgatgcgcaaatctacatctccactgcta
accaagttgggtattttcatttgggcatggccagatgggccaaaagatatggttgagaaa
accaggctattacaagaaatgggttttcctttgactgcttactacagtaagccagttact
acagctagcgaggttattcactggcgaaaactttggtttcaaacaccgctgccttttgtg
acggatggtgttgttatccgccaagaggaagaacccgcagggcggtattggcaggcaatg
ccaggaaactggtctgtagcgtggaaatatcggccaccgcagcagctcactgaaattaaa
gatatccatttcacggttgggcgtaccgggaaaatcactactattttacaggttaccccg
gtaaagattgatgataaatggatccgcagagtgaatattgggtctgtttcccgttggaaa
aaatggaatatcatacccggtgaccaagtcattatcacattagctggtcagggtattcca
cggctagatgaggttatttggcgagtgagtcagcggcataaatttaccccgcccgctgtg
gatacgtttcatcatctaagctgcttcagccgcttaccggttgagtgtgaaccccagttt
ttatctcgcctagtgtggcttagtggagccaacggcctcgacatgcagggagtagggagc
ggtttgtggcgagatcttgtccattatgggcttattaatgatttagtcggttggctctca
ctgtctgttgagcaaattgcggcggttcctggtattgggcagggacgggcagaaaagatt
tatcagcaatttcaacgcaccagacagcaacctttttctaaatggctgcaggctttggga
ttcccgttagcaatatctgttgattctccatggcgctctttacagcaaaagagtagtgcc
gagtggcgcttaatatcgggtgtcgggccgatacgtgcaaaccaaattaatcatttctta
catcatccggaagtacaggctatggttgatttcttgtcacagcagggaattgcagggttt
cggccggaagagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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