KEGG   Yersinia enterocolitica subsp. palearctica Y11 (serotype 0 3): Y11_05201
Entry
Y11_05201         CDS       T02010                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
yey  Yersinia enterocolitica subsp. palearctica Y11 (serotype:0:3)
Pathway
yey03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:yey00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Y11_05201
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:yey03019]
    Y11_05201
   03009 Ribosome biogenesis [BR:yey03009]
    Y11_05201
Enzymes [BR:yey01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Y11_05201
Messenger RNA biogenesis [BR:yey03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Y11_05201
Ribosome biogenesis [BR:yey03009]
 Prokaryotic type
  rRNA processing factors
   Y11_05201
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: CBY27661
UniProt: A0A0H3NRI4
Position
complement(554681..558139)
AA seq 1152 aa
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADALQWD
LSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEH
IAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAID
INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRL
RDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI
LRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPH
YSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEAAIERKRPEQPALATFSLPTEVPPESA
PAAANVKPTAAPQAATAAVAEQPGFLSRLFSGLKGLFGGSTETEVKPVEVEKTETNENRR
NDRRNPRRQNNGRKDRGDRTPREGRDNSSRDNNARDNSTRDNGNRDNANRDNSNREGRDD
QRRNNRRPAQQATTPQAQTEVVEADKTQREEQPARRGDRQRRRPQDDKRQVSQDVKAKVD
ADIVTAVVEEAQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNVLESSVSEPVSHITAP
VVQEEVKLLPQASSQADDEASNDRNGNNENGMPRRSRRSPRHLRVSGQRRRRYRDERYPT
QSAMPLAGAFASPEMASGKVWVRYPVAQPFEPAFVENPVEEQQPVEQVQEVTAVVEQVAV
VAAPVVVAAVAETVLPTPAPQHKPGGSSSSAAAVPGRAPVVVETAIVETAIVETVTVAPI
VETHAVEEPTQVTEIAPAAETITTVEPVIEDAVATETVVEATIEPVAVVEEATQELVVEE
TAVVVDDVTVAEEAVVEDVTVEEAVVEAPIVAETVVEDSVAEEATVTELPTDTAPVAVAP
QQPVVAHPEGVLFKHYASAPMTKAPAPDYQPASPSQGHWERPAFDFAGKGSAGGHAAATK
ATAPATKPQSVE
NT seq 3459 nt   +upstreamnt  +downstreamnt
atgttgattaacgcaactcagcaagaagagttgcgtgttgcccttgtagatggacagcgg
ctgtatgatttggatattgaaagcccaggtcatgaacagaaaaaagcgaatatttacaaa
ggtaaaatcacccgaatcgaacccagtctggaagccgcttttgttgattacggcgctgaa
cgacatggtttcctcccattaaaagaaatttctcgcgaatatttccctagtaattattcc
tctcatggccgcccaaacatcaaagatgtgctgcgcgaaggccaggaagttattgttcag
gttgataaagaagaacgcggtaataaaggtgccgcactcacgactttcatcagcctggct
ggtagttatttagttctgatgcctaataacccacgcgctggtggtatttctcgccgtatc
gaaggtgatgaccgcactgaactgaaagaagccctatcctccctgcaattgcctgatggc
atgggtctgattgttcgtacagccggtgttggtaaatctgctgatgcgctacaatgggac
ttatcgttccgtctgaagcactgggatgcgattaaaaaagccgctgaaggccgccctgcg
ccgttcttgatccatcaggaaagtaacgtaattgttcgtgctttccgtgattatctccgc
ccggacatcggcgaaatcctgatcgataaccctaaagttctcgaactggctaaagagcat
atcgcagcgcttggccgcccggatttcagcagcaaaatcaaattgtatagtggcgaaatc
ccattattcagtcactaccagattgagtcacagattgaatctgcgttccaacgtgaagtg
cgtctgccttccggtggttctatcgttattgataccaccgaagccctgacagcgattgat
atcaactctgcacgtgctacccgtggtggtgatatcgaagaaacggcattcaataccaac
cttgaagccgccgatgaaattgcccgtcagttgcgtctacgtgacttaggtggtctgatt
gtcatcgactttatcgatatgacaccggtacgccaccaacgtgaagtagaaaaccgctta
cgtgatgccgttcgtcaagaccgtgcgcgtatccagattggtcgcatctctcgcttcggt
ttactggaaatgtcccgccagcgcctcagcccatcactgggtgagtcaagccaccatgtg
tgcccacgctgtagcggcaccggtactgtgcgtgacaacgaatctctgtcactttctatt
ctgcgtttgattgaagaagaagcgctgaaagagaatacccatgaagttcacgccattgtg
ccggtacaaattgcatcgtatctgctgaacgaaaagcgtgaatctgttaatgccatcgaa
aaacgccaggggggtgtgcgggcagtgatcgtaccaaacgatcagatgcaaacgccgcat
tactctgtacttcgcgtgcgcaaaggcgaagaagtcccttctctcagctatttgctgcca
cagctgcatgaagctgaaatggcacaaccactggaagaagcggccatcgaacgtaaacgc
ccagagcaacctgcgctggcgacgttctctctgccaacagaagtgccaccagagtcagcc
cctgctgctgcgaatgttaaaccaacagccgcaccacaggccgcaacagctgcggtggca
gaacaacctggtttccttagccgcctgttcagtgggctgaaaggtctcttcggtggttca
acagaaactgaggtaaaaccggttgaagttgagaaaactgaaaccaacgaaaaccgtcgt
aatgatcgccgtaatcctcgccgccagaataatggccgcaaagaccgtggtgaccgcacg
ccgcgcgaaggtcgtgataacagtagtcgcgacaacaatgcccgtgataatagcactcgt
gataacggcaaccgtgacaatgctaaccgcgataatagcaatcgcgaaggccgtgacgat
cagcgccgcaataatagacgcccggcgcaacaagcaacgacaccacaggcacagaccgaa
gttgttgaagcagataaaacacagcgtgaagaacagccagcgcgtcgcggtgatcgccaa
cgtcgtcgcccacaagatgataaacgccaggtatcacaagacgttaaagctaaagttgat
gcggatatcgtcacagctgtagtcgaagaagcacaacctgagcaagaagaacgtcaacaa
gtgatgcagcgccgtcaacgtcgccaattgaatcagaaagtccgtattcaatccgcaaat
gatgagctgaatgttctggaaagttctgttagcgagccagtttcccacattactgcgcca
gtagtgcaggaagaagtgaaattgctgccgcaagcaagctctcaggccgatgatgaagca
tcgaacgatcgtaatggcaacaatgaaaatggcatgccacgtcgctctcgccgctcacct
cgccacctgcgtgtcagtggtcaacgccgtcgccgctatcgtgatgagcgctacccaacc
cagtcagctatgccgctggcgggtgctttcgcctcaccagaaatggcctcaggtaaagtg
tgggtgcgttatccagtagctcaaccgtttgaacccgcctttgtggaaaatccggttgaa
gaacaacagccagttgaacaggtgcaggaagttactgctgtagtagaacaagtcgctgtt
gttgcagcacctgttgtcgttgctgccgtagctgaaactgtcttgccgactccagcccca
caacacaaaccaggtggttcttcatcatccgctgctgccgtaccgggccgtgcgccggtt
gttgtggaaacggcaatagtggaaacagcaattgtagaaacggtaactgtagcgccaatc
gttgaaacccatgctgttgaagaacctactcaggtaactgaaattgcaccagcagcagaa
actattacgacagtcgagccagtgattgaagacgctgtggcaacagaaactgtcgttgaa
gcgacaatagaacccgtcgctgtcgtggaagaagccacccaagagcttgttgttgaagaa
acagcagttgtagttgatgacgtgacagtcgctgaagaagctgtagttgaagatgtgaca
gttgaagaagcggtggttgaagcaccaatcgtggcggaaaccgtggttgaagattctgtg
gcagaagaagctacggtaactgaattaccaaccgacacagctcctgttgccgttgcaccg
cagcagccagttgttgctcatcctgaaggtgtgttattcaagcactatgcttcagcgcca
atgaccaaagcaccggcacctgattaccaaccagcatcgccaagccaaggccattgggaa
cgcccagcctttgattttgcaggtaaaggttctgcgggtggtcatgcggcagcaactaag
gcaacagcaccagcaacaaagccacaatcggttgaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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