KEGG   Yersinia frederiksenii: AW19_3207
Entry
AW19_3207         CDS       T03606                                 
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase, omega subunit
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
yfr  Yersinia frederiksenii
Pathway
yfr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:yfr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AW19_3207 (rpoZ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:yfr03021]
    AW19_3207 (rpoZ)
   03400 DNA repair and recombination proteins [BR:yfr03400]
    AW19_3207 (rpoZ)
Enzymes [BR:yfr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AW19_3207 (rpoZ)
Transcription machinery [BR:yfr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AW19_3207 (rpoZ)
DNA repair and recombination proteins [BR:yfr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AW19_3207 (rpoZ)
SSDB
Motif
Pfam: RNA_pol_Rpb6 DUF1599
Other DBs
NCBI-ProteinID: AJI87060
Position
3463406..3463681
AA seq 91 aa
MARVTVQDAVEKIGNRFDLVLVAARRARQIQSGGKDALVPEENDKVTVIALREIEEGLIT
NQILDVRERQEQQEQEAAEIQAVTAIAEGRR
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcacgcgtaactgttcaagacgctgtagagaaaattggtaaccgttttgacctggtg
ttggtcgctgctcgtcgggcacgtcaaatccagtccggcggtaaagacgcactggttcca
gaagaaaacgataaagtcactgtgattgcgctgcgcgaaatcgaagaaggcctgattaca
aatcagattctcgatgtacgtgaacgccaagaacagcaagagcaggaagccgcagagatc
caagcggtaaccgcgattgctgaaggtcgtcgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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