KEGG   Yersinia frederiksenii: AW19_3228
Entry
AW19_3228         CDS       T03606                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
yfr  Yersinia frederiksenii
Pathway
yfr03030  DNA replication
yfr03410  Base excision repair
yfr03420  Nucleotide excision repair
yfr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:yfr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AW19_3228 (polA)
   03410 Base excision repair
    AW19_3228 (polA)
   03420 Nucleotide excision repair
    AW19_3228 (polA)
   03440 Homologous recombination
    AW19_3228 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yfr03032]
    AW19_3228 (polA)
   03400 DNA repair and recombination proteins [BR:yfr03400]
    AW19_3228 (polA)
Enzymes [BR:yfr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     AW19_3228 (polA)
DNA replication proteins [BR:yfr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AW19_3228 (polA)
DNA repair and recombination proteins [BR:yfr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     AW19_3228 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AW19_3228 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH HHH_5
Other DBs
NCBI-ProteinID: AJI86724
Position
complement(3489214..3492012)
AA seq 932 aa
MAQIAENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT
LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISSLTFRGAKTMSAKLEQNK
DVAYLSYKLATIKTDVELDVTCDELKVTAPDDDQLHQLFSRYEFKRWLADVEAGKWLEGK
KDRPTGQSSNKVFVAAESAPAVEVTAVLSQENYQTILDEKSLSDWIERLRNSEVFAFDTE
TDGLDTLSSNLIGFSFAVAPGEAAYLPVAHDYLDAPTQLDRNWVLAQLKPLLEDEKALKV
GQNLKFDQSMLARYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIA
GKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL
SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLP
ILKKTPGGAASTNEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHT
SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHL
SQDQGLLTAFAAGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIYGMSAFGLARQL
NIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRK
AAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESA
EQKIRELMEQSMQLAVPLKVDVGVGDNWDQAH
NT seq 2799 nt   +upstreamnt  +downstreamnt
atggcccagattgcagaaaatccattgatcctcgttgacggttcctcttacctctatcgt
gcttaccatgctttcccgccgctgaccaacggcagcggtgagccaacgggcgcgatgtat
ggcgtgttgaacatgttgcgcagtttgttgctgcaatatcgtccaagccatgtcgctgta
gtttttgatgctaaaggtaaaacattccgcgatgagcttttcgctgaatataagtctcac
cgaccccctatgccggatgatttacgcgctcaaattgagccacttcaccaaatggttaag
gctatgggattacctttattggtcgtttccggcgttgaggctgacgatgttattggcact
ttggcacaagaagctgaaaaagcaggtcatgctgtattaattagtactggtgataaagat
atggcgcaattagttacgccgaatatcactctcatcaatacaatgaataacgctatttta
gggccacaggaggtatgtgagaaatatggcgttccccctgagctgattattgattttctc
gccctgatgggggattcctcagataatattcctggagtgccgggtgttggtgagaaaact
gcacaggctttattacaaggtctgggtggtctggatgcgctattcagtaatttggataaa
atatcctcgctgacatttcgtggtgcaaaaacgatgtcggccaaattggagcagaataaa
gatgttgcctatctctcctataaattagccacgattaaaacggatgttgaactggatgtg
acttgtgatgagctgaaagtcacggctcctgatgatgatcagctacatcaattatttagc
cgctatgaatttaagcgctggctggcggatgttgaagcagggaaatggctggagggtaaa
aaagatcggccaacagggcagagcagcaataaagtttttgtcgcagcagaatcagctcct
gcggttgaagttaccgcggtgctctcacaagaaaattatcaaactatcttggatgagaaa
tctttaagcgactggattgaacggcttagaaactcggaggtttttgcgtttgatactgaa
actgacggccttgatacccttagcagtaatttaattggtttttcttttgccgtggcaccg
ggtgaagccgcttatttgcctgtagctcatgattatctggacgcccctacccagcttgat
agaaattgggttctggcccagcttaaacctttactggaagatgaaaaggccctgaaagtc
gggcagaatcttaagtttgaccaaagcatgctggcgcgttatgacattgatctgcgtggt
attgctttcgataccatgttggaatcttatgttttagacagtgttgctggccgacatgat
atggatagcttggcggagcgctatctcaatcataagaccattacctttgaagaaattgct
ggcaaaggcaaaaatcagctcacttttaaccaaattgcgttagagcaagctgggccttat
gcggcagaagatgctgatgtcaccttacagttgcatttagtcttgtggccaaaattgcag
caaagtgaggggcttaagcgagtattccaagaaattgagatgccgctgttaccaatattg
tcccgcattgagcggactggtgtattgattgaccaaaatatattggcggcacactccaaa
gaactgactattcgccttgatgaattggaaaaacaagcacatgaattggctgaagagcca
ttcaatctcgcctcaccgaagcagcttcaggccattttgtatgaaaaacaaaaattgccg
atcttgaagaaaacaccaggaggcgcggcttcaaccaatgaagaggtgctggctgagttg
gcactggattaccctctgccgaaggtgattcttgagtatcgcggcttggcgaaactgaaa
agcacttataccgataaattgccgttgatgattaacccggtttctgggcgagttcatact
tcttatcatcaggctgtcacggcgactgggcgtttatcttcccgtgatcctaacctgcaa
aacattccggtgcgaaatgaagaagggcgtcgtatacgtcaggcttttattgcgccaaag
ggttaccgcatcatggcggctgactactcacagattgagttgcgcatcatggcccatttg
tcgcaagaccaaggattactgactgcatttgctgctgggaaggatatccaccgcgcgact
gcggctgaagtctttggtttgccattggaaaaagtcacaaacgaccaacgccgcagtgct
aaagccattaactttggtctgatttatggcatgagcgcattcggtttagcgcgacagctg
aatattcctcgtggggaagcgcagcgctatatggatctctattttgagcgctaccctggt
gtgctggaatatatggaacgcacgcgcaagcaagccgctgaacaaggttatgttacgacg
ctggatggccgccgcctctatctacctgatattcactcacgcaatgccacgcgccgtaag
gcggccgagcgtgaagctatcaatgcgccgatgcaaggcactgccgctgatattattaag
cgcgcaatgattgcagtggatgcttggttgcagcaagaacctgagcctttggtgcgggtt
atcatgcaagtacacgatgaattggtgtttgaggtgcatgaaagtgtattggaaagcgct
gagcagaaaattcgtgagctgatggaacagagtatgcaattggccgtgccattaaaagtg
gatgtcggtgtgggtgataactgggatcaagcgcactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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