KEGG   Yersinia hibernica: D5F51_01615
Entry
D5F51_01615       CDS       T05961                                 
Name
(GenBank) DNA-binding protein HU-alpha
  KO
K05787  DNA-binding protein HU-alpha
Organism
yhi  Yersinia hibernica
Brite
KEGG Orthology (KO) [BR:yhi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yhi03032]
    D5F51_01615
   03036 Chromosome and associated proteins [BR:yhi03036]
    D5F51_01615
   03400 DNA repair and recombination proteins [BR:yhi03400]
    D5F51_01615
DNA replication proteins [BR:yhi03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    D5F51_01615
Chromosome and associated proteins [BR:yhi03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    D5F51_01615
DNA repair and recombination proteins [BR:yhi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      D5F51_01615
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_2 HU-CCDC81_euk_1 VWA_3 NA37
Other DBs
NCBI-ProteinID: QAX77373
UniProt: A0A481Q8X3
Position
342781..343053
AA seq 90 aa
MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKDGDPVQLVGFGTFKVNHRNERTG
RNPQTGKEIKIAAANVPAFVSGKALKDSVK
NT seq 273 nt   +upstreamnt  +downstreamnt
atgaataagactcaactgattgacgtaattgcggacaaagcggacctttctaaagcacaa
gcaaaagctgctctggagtccacactggcggcaattaccgaatctctgaaagacggtgat
ccagtacaattggttggtttcggtactttcaaagtaaaccatcgtaatgagcgcactggc
cgcaacccacaaaccggtaaagaaatcaaaattgctgcagctaatgtgccagcgtttgtt
tctggtaaagcactgaaagactctgttaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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