KEGG   Yersinia hibernica: D5F51_17335
Entry
D5F51_17335       CDS       T05961                                 
Name
(GenBank) exodeoxyribonuclease V subunit alpha
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
yhi  Yersinia hibernica
Pathway
yhi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:yhi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    D5F51_17335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:yhi03400]
    D5F51_17335
Enzymes [BR:yhi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     D5F51_17335
DNA repair and recombination proteins [BR:yhi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     D5F51_17335
SSDB
Motif
Pfam: RecD_N AAA_19 AAA_30 UvrD_C_2 Viral_helicase1 Helicase_RecD AAA_11 SH3_13 AAA_22 UvrD-helicase SLFN-g3_helicase PhoH AAA_16 nSTAND3 UvrD_C T2SSE CbiA AAA_28 FtsK_SpoIIIE Flavi_DEAD MukB SRP54 MeaB TrwB_AAD_bind AAA Mg_chelatase DO-GTPase1 NTPase_1
Other DBs
NCBI-ProteinID: QAX80147
UniProt: A0A481QHB6
Position
complement(3654203..3656086)
AA seq 627 aa
MMTLLEQAVRDHLLRPLDVQFSRMIAGDNAPMLQLAAAVLSAEAGAGHVCLPLSYLQPDQ
LFGGRQALLSQALWQAAGAPDQLQWMQALNHSSAVSDGSQPTPLVLQNGRLYLQRMWQYE
GDVVRFIASDNTVSLINDARDVNEILLRETLDRLFGPADIGVDWQKVAAAVAATRRISVI
SGGPGTGKTTTVAKLLTALIQLSQGQRLRIQLAAPTGKAAARLTESLGNATRQLSLTDHE
RRLFPDQASTLHRLLGAQPHSQRLRYHRGNPLNLDVLVVDEASMVDLPMMARLIAALPAK
AQVIFLGDRDQLASVEAGAVLGDICRFAELGYSEPRAEQITRLTGCVLAGSIPIGDVQTD
SVNVRDSLCLLRKSYRFDEKSGIGQLAFAVNTGRYREALSILDGTYSDIERFSLGDSDDY
QVLLEHCVAGYQHYLELAAAGADAVDVLAAFGRYQLLCALRSGPFGVSGLNERIEQLLHR
QRLIERAPGPSGRWYVGRPVMIELNDSALGLFNGDIGIALHDGEGELRVHFQLPDGNIKS
VQPSRLPSHETAYAMTVHKSQGSEFEHTALVLPNNFMPVLTRELVYTAITRARQRLTLYC
SDSVLGHAIRTPTLRVSGLVDRLNALR
NT seq 1884 nt   +upstreamnt  +downstreamnt
atgatgacattactggagcaggcggttcgtgaccacttactacgcccgttggatgttcaa
ttctcacgaatgatagccggcgataacgccccaatgctgcaattggccgcagcggttctc
agtgcagaggcgggggccgggcatgtgtgtttgcctctgagctatttgcagcccgaccag
ctatttggtgggcgacaagcactgttatcacaggcgctatggcaggcggcaggtgcgccg
gatcaattacagtggatgcaggcactcaatcactcttcagcagtcagcgatggctcacaa
cccacaccgctagttttgcaaaatggccgtttatatctacagcggatgtggcaatacgaa
ggggatgtggtgcgctttattgccagtgataacaccgtgtcacttatcaacgatgccaga
gatgtcaacgaaatcttgctaagagagacactcgaccggctatttgggccggcggacatt
ggggttgattggcaaaaagtcgcagccgctgttgcggcgacccgccgtatttccgtgatt
tccggtgggccgggaacaggtaaaacgacgacagtcgctaagttattgacggcactgata
caacttagtcaggggcaacgtttacgtatccaactggccgctccaacggggaaagctgcc
gcacgtttgaccgaatcattgggtaacgcgactcgccagctttcgctgactgaccatgag
cgcaggctatttccagatcaagcatccacattgcaccgtttgttgggcgcgcaaccccat
agtcagcgccttcgctatcaccgtggtaatccgttaaatcttgatgtgctggtggtcgat
gaagcatcaatggtggatttaccgatgatggcgcgacttattgccgcattgcccgccaaa
gctcaggtgatttttctcggtgaccgtgatcaattggcctcggtggaagctggggctgtt
ctgggggatatctgccgttttgctgagttaggttacagcgagccgcgggctgaacaaata
acccgcttaacggggtgtgtattggcaggaagtatcccgattggtgatgtgcagactgat
agcgtcaatgttcgtgatagtttgtgtctactgcgtaaaagctatcgtttcgatgaaaag
tccggtattgggcagttggctttcgccgtgaataccggaaggtatcgcgaggcattatcc
attttagacggaacatattctgatatcgaacgtttctctttgggcgattcagatgactat
caggtactgctggaacattgtgttgccggttatcagcactatctggagttagcggcagca
ggtgcggatgctgttgatgtgctggcagcatttggtcgctaccaactattgtgtgcatta
cgctccgggccatttggtgtcagcggcttaaatgagcgaattgaacagctgttacatcgc
cagcggttaattgagcgcgccccagggccatcagggcgttggtatgttggacgaccggtg
atgattgagcttaatgacagtgctcttggcctcttcaatggcgatattggcattgctttg
catgatggcgagggggagttgcgggtgcatttccagctgccggacggcaatatcaaatct
gtgcagccgagccgtcttcccagccatgaaacagcctacgccatgacagtccataaatcc
caagggtctgagtttgaacataccgcgttggtattgcctaataatttcatgccggtatta
acccgagagttggtctataccgctattactcgcgcccgccagcgtttgacactgtattgc
agcgattcggtattgggccatgcgatacgcacccccaccctgcgagttagcgggttggtt
gaccgcttgaatgcgctgagataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (28)   
   Pfam (28)   
All databases (37)   

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