KEGG   Yersinia hibernica: D5F51_19960
Entry
D5F51_19960       CDS       T05961                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
yhi  Yersinia hibernica
Pathway
yhi02020  Two-component system
yhi02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:yhi00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    D5F51_19960
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    D5F51_19960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:yhi03021]
    D5F51_19960
Transcription machinery [BR:yhi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     D5F51_19960
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: QAX80596
UniProt: A0A481QHY2
Position
4224362..4225795
AA seq 477 aa
MKQGLQLKFSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDLHEEIEAKK
TVDSESLDTREALEQKDMPEELPLDATWDEIYTAGTPSGMRNDYSDDELPVYQGETTQTL
QDYLMWQVDLTPFSETDAAIATSIVDAVDETGYLTVPLEDILESMGDENIALDEVEAVLK
RIQHFDPIGVAARNLRECLLVQLSQYAKDTPYLAEARLVISDYLDLLGNHDFRTMIRLSR
LKEDTLKEAIALIQSLDPRPGQSINIGESEYVIPDVLVRKDKGHWTVELNADSIPRLKIN
QQYAAMGNTTRNDSDGQFIRSNLQEAKWLIKSLESRNETLLKVARCIVEQQVAFFENGPE
FMKPMVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTDSGGEASSTAI
RALVKKLVAAENPAKPLSDSKLTTLLCEQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgaagcaaggtttgcaactcaagtttagccaacaactggccatgactccgcagctacag
caggcgattcgcctgttgcagctttctacgctagaactccagcaggagattcagttagcg
ctggagagcaacccgctgctagagcaaactgatcttcatgaagagatagaggccaaaaaa
acggtcgacagtgaatcgctcgacactcgcgaagcactggaacaaaaagatatgccggaa
gagttgccgctcgatgccacctgggatgaaatttacaccgccggtacgccatcgggcatg
cgcaatgattacagtgacgatgagctgccggtctatcagggggaaaccacccaaacactg
caagattatctgatgtggcaagtggacttaacacccttttccgaaaccgatgccgcgatt
gcgacctccatcgtcgatgctgttgatgaaactggctatcttactgtgccgctagaagac
attctggaaagcatgggcgatgaaaacatcgcactggacgaagttgaagccgtactcaaa
cgaattcaacactttgatcctattggtgttgctgctcgcaatttgcgcgaatgtttattg
gtgcagctgtcgcaatatgctaaagataccccctatcttgccgaagcacgtttggttatt
agtgattatctggatttgctaggcaaccatgatttccgcacgatgatccgtttaagtcgg
ctaaaagaagatacacttaaagaagccattgctctgattcagtcactcgacccacgccct
ggtcaatctattaatatcggggagtctgagtacgtcattcccgatgttttggttcgtaaa
gacaaagggcactggacggtcgagctgaatgccgatagcattccgcgcctgaaaattaat
cagcaatatgcagcaatgggaaacactacccgcaatgatagcgatgggcagtttatccgc
agtaatctacaagaagcaaaatggttgataaaaagccttgagagccgcaatgaaacgctg
ctgaaagtggcacgttgcattgtcgagcagcaagtggccttttttgagaatgggcctgaa
tttatgaaacccatggtgctggcagatatcgcccaagccgtggatatgcatgaatcgaca
atttcccgtgtgaccacgcagaaattcctgcacagtcctcggggcattttcgagctgaaa
tatttcttctccagtcacgtcaatacagatagcgggggtgaagcttcttctactgccatc
cgtgcactggtgaaaaaattggttgcggcagaaaaccctgccaaaccccttagcgacagt
aagctgaccacactattatgtgaacaaggcattatggtggcacggcgtaccgtcgcgaag
taccgagagtcgttatccatcccgccgtcaaatcaacgtaaacagttggtttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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