KEGG   Yersinia massiliensis: DA391_04455
Entry
DA391_04455       CDS       T05402                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
yma  Yersinia massiliensis
Pathway
yma03410  Base excision repair
yma03430  Mismatch repair
yma03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:yma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    DA391_04455
   03430 Mismatch repair
    DA391_04455
   03440 Homologous recombination
    DA391_04455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:yma03400]
    DA391_04455
DNA repair and recombination proteins [BR:yma03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     DA391_04455
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     DA391_04455
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DA391_04455
SSDB
Motif
Pfam: DHHA1 DHH RecJ_OB FAM212
Other DBs
NCBI-ProteinID: AVX36976
UniProt: A0A2R4NLL3
Position
978664..980397
AA seq 577 aa
MTLKTQLRRREEVDGSHLPEQLHPLLRRLYASRGVTSSEELERGVKGLLAWQQLDGIDAG
VTLLQQALADRRRIVIVGDFDADGATSTALAVLALRSMGGSNIDYLVPNRFDDGYGLSPE
VVEQVAALGAELIVTVDNGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAAEAIINPNLA
GCDFLSKSLAGVGVTFYLMLALRTRLRDSGWFEQRALAVPNLAELLDLVALGTVADVVPL
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDM
SIGVALLLSDDIAQARALAIDLDSLNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNP
GLILKFGGHAMAAGLSLEQDKFDEFRQCFADLVGEWMDASQLEGVVWSDGELKGNDLSIE
TAELLRDGGPWGQSFPEPTFDGRFRILQQRLVGERHLKLMVEPLDGGPLLDGIAFNIDTT
LWPDSSVREVKLAYKLDINEFRGNRSVQLLIQHLWPY
NT seq 1734 nt   +upstreamnt  +downstreamnt
gtgacattgaaaactcaacttcgtcgtcgtgaagaagtggatggcagccatttgcctgaa
caattgcatcctctgttacgccgcctttatgccagccgtggtgtgacaagttcagaagaa
ctagagcgcggtgtcaaggggctgctggcatggcagcaactcgacggcattgatgcgggt
gtcaccctattgcaacaggctctggctgatcgtcggcgcatcgtgatcgtcggcgatttt
gatgctgatggtgcgaccagcacggcactggccgtgctggcgttgcgcagcatgggtggc
agtaatattgattacttagtgccaaatcgttttgacgatggctacgggcttagccctgaa
gtcgtcgagcaagttgccgcccttggcgcggaactgattgtcacggtagataacggtatt
tcctcccacgcaggggtggacttggcacatgccaagggcattcaagtgctggttaccgat
catcatttacccggtgaaacgctgcccgcggctgaggccatcattaaccccaatttagcc
ggttgcgattttctgtctaaatctctcgcgggggttggtgtcactttttatctgatgttg
gcattacgtactcgcctcagagatagtggctggtttgagcaacgtgcgctagctgtcccc
aatttagcggaattgctggatttagttgcattgggcactgtcgccgatgtggtgccactg
gatgccaataatcgcatattggtacatcaaggtcttagccgtattcgtgcagggaaatgc
cgcccagggatccgcgcattactggaagtggcgaaccgtgacgccagacagttagccgcc
aatgacttgggcttttctctcggccccagactgaatgcagcagggcgtttggatgatatg
tctattggggtggcgctgttgctcagtgacgacattgcgcaggctcgcgcactggcaatc
gatcttgatagcctcaatcagactcgccgcgagatagagcaaggtatgcaggtcgaagcc
ctgcaactgtgtgaccaactggagcgcaccagtactgagttaccttacggtatcgcgatg
tatcaccccgagtggcatcaaggtgtggtgggtattttagcctcacggattaaagaacgt
tttcatcggcccgtgattgcatttgcccctgcaggagagggtttactaaaaggctcagga
cgcagcgtagcggggttacatatgcgtgatgcccttgaacgcctcgatactttaaaccct
ggcttgattctgaagtttggcggacatgctatggcggcaggattatcgctagagcaggac
aaatttgatgaatttcggcaatgtttcgctgatttagtcggtgagtggatggatgcttca
caattagaaggcgtagtctggtctgatggtgaactgaaaggcaacgatttatcgattgaa
acggcagagttgcttcgcgatggcggcccttgggggcaatcattcccagaacccactttt
gatggcagattccgcattttacaacagcggctagtgggggagcggcatctgaaacttatg
gttgaaccattagatggcgggcctttgctcgatggcatcgcgtttaatattgatacgacg
ttatggcctgacagcagcgtgcgtgaagttaagctcgcgtataagctcgatattaatgag
tttcgcggtaaccgcagtgtccagttgctgatccaacatttgtggccttattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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