KEGG   Yersinia pestis CO92 (biovar Orientalis): YPO1590
Entry
YPO1590           CDS       T00063                                 
Symbol
ams
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
ype  Yersinia pestis CO92 (biovar Orientalis)
Pathway
ype03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ype00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YPO1590 (ams)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ype03019]
    YPO1590 (ams)
   03009 Ribosome biogenesis [BR:ype03009]
    YPO1590 (ams)
Enzymes [BR:ype01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     YPO1590 (ams)
Messenger RNA biogenesis [BR:ype03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     YPO1590 (ams)
Ribosome biogenesis [BR:ype03009]
 Prokaryotic type
  rRNA processing factors
   YPO1590 (ams)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: CAL20235
UniProt: A0A380PKJ8
Position
complement(1812749..1816414)
AA seq 1221 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPP
EEAPTVAKAKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSE
NRRNDRRNPRRQNNGRKERNDRTPREGRDNSSRDNTNRDNTNRDNTSRDNANRDGANRDN
SNRDNSGRDNVSREGREDQRRNNRRPAQPTTTSQGQTEVVEADKAQREEQPQRRGDRQRR
RQDEKRQAPQEIKADVAEAPVIEEVQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNTL
ESPVSAPVAQVVVAEVQEEVKLLPQITAQTDDDSANERTTNNENGMPRRSRRSPRHLRVS
GQRRRRYRDERYPAQSAMPLAGAFASPEMASGKVWVRYPVTPVVEQVVVEQIAIEQTTTV
EQTAIVEQVSVANIVTAQLPVEQVQNTVAEQESSATPSVMTTPTVAVATAAVTLAPQHKP
GGSSSSAAAVPGRAPIVAAVPVVAETTAAETVVAKTEAAIDAVAVVEPMAAVESIAAVET
ATVEPVVTEEPNVTEPAVAEPAIETDPVEETTSVVEIAPTVEPTPMIEDTAVVVAATVVD
TTPETASTVQDDIVEETAVEAVNISETVAEETAITEPAAEAIATQQTTIAQETIAEPTVE
TAIDVVAVVKQPAVAHPEGVVFKHFASAPMTKAPAPDYAPESPTKGHWERPTFDFSGKGS
AGGHAAATQATAPATKPQSVE
NT seq 3666 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttgattaacgcgactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatctggatattgaaagcccaggccatgaacagaaaaaagcgaat
atttataaaggtaaaatcacccgaatcgaacctagtctggaagccgcttttgttgattat
ggcgcggaacgacatggtttccttccattaaaagaaatctctcgcgagtacttccccaat
aattactcttcccatggccgcccaaacatcaaagatgtcttgcgtgaaggccaggaagtt
attgttcaggttgataaagaagaacgcggcaataaaggtgctgcattgaccactttcatt
agtctggctggcagctatttggttctgatgccaaacaacccacgtgcgggcggtatttct
cgccgcatcgaaggtgatgaccgcaccgagctgaaagaagccctatcttccctgcaatta
cctgatggcatgggtctgattgttcgtactgcgggtgtgggcaaatctgctgacgcactg
caatgggatttgtcattccgcctgaagcactgggatgcgattaaaaaagcggctgaaggt
cgccccgcgcccttcttaatccatcaggaaagtaacgtgatcgtccgtgctttccgcgat
tacctgcgcccagatatcggcgaaatcctgattgataatccgaaggttctcgaactggca
aaagagcatattgctgcccttggtcgcccggatttcagcagcaaaatcaaattgtatagc
ggtgaaattccgttattcagtcattatcaaattgagtcgcagatcgaatcggccttccaa
cgtgaagtgcgtttgccttctggtggctctatcgttattgacacgaccgaagcactgacg
gcgattgatatcaactcagcccgagccacacgtggtggtgatatcgaagagaccgcgttt
aataccaaccttgaagccgctgacgaaattgctcgccaattacgtttacgtgaccttggt
ggtctgatcgttatcgacttcattgatatgaccccggtacgccatcaacgtgaagttgaa
aaccgtttacgcgatgctgtccgtcaggaccgtgcccgtatccagattggtcgtatctca
cgctttggtttgctggaaatgtcccgtcagcgcctcagcccatcgctgggtgaatccagt
caccacgtctgcccacgctgtagcggtaccggcaccgtacgtgacaatgaatcgctgtca
ctttctattctgcgtttgattgaagaagaagcgctgaaagagaatacccatgaagttcac
gccatcgtaccggtacaaatcgcatcgtacctgttgaacgaaaaacgtgaatcagtaaac
gctattgagaagcgtcaaggtggggtccgtgccgtgatcgtgccaaacgatcagatgcaa
acaccgcactactctgtcctgcgcgtacgcaaaggcgaagaagtcccgtctctcagctat
ctgttgccacaactgcacgaagcagaaatggcgcaaccgctggaagaggccaccattgaa
cgtaagcgcccagaacaaccagcattggctaccttctctctgccaacagaagtgccacca
gaggaggcccctaccgtagccaaggctaaacctgcggttgcaacacccgccgcggttagt
actgacgtagaacaacctggcttctttagccgtttgttcagtggcttaaaaaatatgttt
ggtgcttccgctgaagcagaagtgcaacccgctgaagttgtaaaaaccgacactagcgaa
aatcgccgtaatgatcgccgcaatcctcgccgccagaataatggccgtaaagagcgcaat
gatcgtactccacgcgaaggtcgtgataattccagccgcgataacaccaaccgtgataac
accaaccgtgataacaccagtcgtgataacgctaaccgcgatggcgctaatcgtgataat
tccaatcgcgacaacagtggccgcgataacgttagtcgtgaaggccgcgaagatcaacgc
cgcaacaacagacgtccggcccagccaacgacaacatcgcaagggcaaactgaggttgtt
gaagccgataaagcgcaacgtgaagaacaaccacagcgccgtggtgaccgtcagcgtcgt
cgtcaggatgagaagcgtcaggcaccacaagaaatcaaagcagatgttgcggaagcccct
gttatagaagaggtacaacctgagcaagaagaacgccaacaggttatgcaacgtcgtcag
cgtcgccagttgaatcagaaagtccgtattcaatcggcaaatgatgagctgaatacgttg
gaatctcctgtcagtgcacctgttgcgcaggtggtggtggctgaagtacaagaagaagtg
aagttactgccacaaattactgctcaaactgatgatgacagtgctaatgaacgtactacc
aataatgaaaatggtatgccacgtcgttcccgtcgttcaccacgccatctgcgtgttagt
ggtcaacgccgtcgccgttatcgtgatgaacgttacccggcacaatcggccatgcctctg
gcaggggcttttgcctcaccagaaatggcatccggtaaagtgtgggttcgttatccagtg
acgccagtcgttgaacaggttgtcgttgaacaaatcgccattgaacaaactacaaccgtt
gagcaaacagccatcgtcgagcaggtcagtgtagcgaatattgtcactgcgcaattgcct
gtagagcaggtgcaaaacaccgttgcagaacaagaatcgagtgcaactccatctgttatg
acaacaccaaccgttgcggttgccaccgcagcggtaacactggccccacaacacaaaccg
gggggttcttcatcttcggctgctgcggttccaggccgtgcacctatcgttgctgcagtg
cctgtcgttgctgaaacgactgctgctgaaacggttgttgctaaaactgaagccgctatt
gatgcggtggctgttgtggaaccgatggctgctgtggaatcgatagctgctgtggaaact
gcaactgtagaaccggttgttacagaagaaccgaatgtcacagaaccggccgttgccgag
ccagcgattgaaactgatcctgtcgaagaaacaacatcagttgtagagattgctccaacc
gttgaaccaacgcctatgatcgaagatacggctgttgtagtcgctgcgacggtggttgac
actacaccagaaactgcgtcaaccgtgcaagatgatattgttgaagagacagcagttgaa
gcggtaaatatctctgaaactgtggctgaagagaccgcaataacggaacctgctgctgaa
gccattgctactcagcaaaccactattgcgcaggagaccattgctgaaccaacggttgaa
accgctattgatgtggttgcggtagtcaaacaacccgcggttgcgcatccggaaggggtg
gtgttcaaacacttcgcttcagcgccaatgaccaaagcgccagcacctgattacgcccct
gaatcaccgaccaaaggtcactgggagcgtccaacctttgatttctcaggcaaaggttct
gctgggggtcatgccgcggctacccaggcaactgcacccgcgaccaaaccgcaatctgtt
gagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (48)   

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