KEGG   Yersinia pestis Harbin 35 (biovar Medievalis): YPC_1705
Entry
YPC_1705          CDS       T01874                                 
Symbol
holB
Name
(GenBank) DNA polymerase III, delta prime subunit
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
yph  Yersinia pestis Harbin 35 (biovar Medievalis)
Pathway
yph03030  DNA replication
yph03430  Mismatch repair
yph03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:yph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    YPC_1705 (holB)
   03430 Mismatch repair
    YPC_1705 (holB)
   03440 Homologous recombination
    YPC_1705 (holB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yph03032]
    YPC_1705 (holB)
   03400 DNA repair and recombination proteins [BR:yph03400]
    YPC_1705 (holB)
Enzymes [BR:yph01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     YPC_1705 (holB)
DNA replication proteins [BR:yph03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     YPC_1705 (holB)
DNA repair and recombination proteins [BR:yph03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     YPC_1705 (holB)
SSDB
Motif
Pfam: DNApol3-delta_C DNA_pol3_delta2 HolB_lid DUF6587
Other DBs
NCBI-ProteinID: ADV98318
Position
1667832..1668854
AA seq 340 aa
MNWYPWLNAPYRQLVGQHSTGRGHHALLLHSLPGNGEDALIYALSRWLMCQQRQGEKSCG
ECHSCRLMLAGNHPDWYVLTPEKGKSSIGVELVRQLIDKLYSHAQQGGAKVVWLPHAEVL
TDAAANALLKTLEEPPEKTYFLLDCHQPASLLATLRSRCFYWYLACPDTAICLQWLNLQW
RKRQIPVEPVAMLAALKLSEGAPLAAERLLQPERWSIRSALCSGLREALNRSDLLSLLPQ
LNHDDAAERLQWLSSLLLDALKWQQGAGEFAVNQDQLPLVQQLAHIAATPVLLQLAKQLA
HCRHQLLSVVGVNRELLLTEQLLSWETALSTGTYSTLPSL
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgaattggtatccgtggcttaacgccccttaccgccaactggttgggcagcacagtacc
gggcgcgggcaccatgcattactgctgcattcattacccggtaatggcgaagacgcattg
atttatgcgctgagtcgttggctaatgtgtcagcagcggcaaggtgagaagagttgtggt
gaatgccatagctgccgcttgatgttggcaggcaaccaccccgattggtatgtactgaca
ccggaaaaaggcaaaagcagtatcggggttgagttggttcgtcaattgattgataaactg
tattcccatgctcaacaaggcggtgcaaaggtggtgtggttgccacatgccgaagtgttg
accgatgccgctgctaatgccctgctaaaaacgctggaagagcctccagagaagacctat
tttctgttggattgccaccaacccgccagcttgctggctacactgcgtagccgctgtttt
tattggtatctggcttgcccggatacggctatttgtctgcaatggctcaatctgcaatgg
cgtaagcggcagatccctgtggagcccgttgcgatgttggcggccctgaaattgagtgaa
ggcgcaccgctggcggctgagcggttgctccaaccagagcgttggagtatccgcagcgct
ttgtgtagcgggctacgcgaggcactgaaccgctcagacttgctgtcgttgttaccacaa
cttaaccatgatgatgctgctgaacgtctgcaatggctctcttcactgctcttggatgcg
ttgaagtggcagcaaggggcaggggagtttgcggttaatcaggatcaattacccttagtg
caacagttggcacacatcgcggcgacgccagtattacttcagttggctaagcaactggct
cattgccgccatcaattattatctgtggtaggtgttaatcgtgaattgttactcactgag
caactgcttagctgggaaacagcactgtccacgggtacttattccaccttaccttcgttg
taa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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