KEGG T01874: YPC

Yersinia pestis Harbin 35 (biovar Medievalis): YPC_3160

Entry

YPC_3160          CDS       T01874

Symbol

phr

Name

(GenBank) deoxyribodipyrimidine photolyase

K01669

deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]

Organism

yph Yersinia pestis Harbin 35 (biovar Medievalis)

Brite

KEGG Orthology (KO) [BR:yph00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:yph03400]
    YPC_3160 (phr)
Enzymes [BR:yph01000]
4. Lyases
  4.1  Carbon-carbon lyases
   4.1.99  Other carbon-carbon lyases
    4.1.99.3  deoxyribodipyrimidine photo-lyase
     YPC_3160 (phr)
DNA repair and recombination proteins [BR:yph03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   Direct repair
    YPC_3160 (phr)
Prokaryotic type
    YPC_3160 (phr)

SSDB

Motif

Pfam:

FAD_binding_7 DNA_photolyase Flg_hook

Other DBs

NCBI-ProteinID:

ADV99666

Position

complement(3050314..3051777)

AA seq 487 aa
MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ
HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ
LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA
PPVLLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSCLS
PYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQHHP
FIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDLL
IDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFIR
RWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDSTRIPN
RKEPSCY

NT seq 1464 nt +upstreamnt +downstreamnt
atgtctacgcatctggtctggttccgcaatgatttacgggtcaccgataatttggcgctt
catgcggcctgtcaggacccacaagcgagcgtaattgccgtgtttattgccacacccgtg
caatgggctgcacatggtatggcacccaggcaggcggctttcctgcgacaaaatttacaa
catttgcaggcagctctcgcggctcgagggataccgctgcattatcaccaatgtgatgat
tttcaggcgtcaaatacttggctagtcgatttttgtcagcaacagcaggtcgatagcctg
ttttattctcaacagtatgaactgaacgagcggttacgtgacgatgcgctggcggtgcaa
ctcagtgagcgagctatcacctgccagtcttttcatgacagtgtattgctcgcgccgggg
acggttctgaccggtaataatgaaatgtataaagtgtttacgccttttcgccgtgcgttt
attcagcgtttattgatgagtgataaccactgtgttccggccccgaaagcccgccatgct
cctcccgttctgctctcaccgttgccttttgattacccacagcagtccgttgatagccag
ttatttcctgcaggggaagacgctgccttacagcgtttacgccgtttttgtcgtgaacag
gtacaggattaccggcaataccgcgatttgccggcggtgcccggtaccagttgcttatcc
ccttatttggtgttgggggtcctttcaccgcgtcaatgttttaatcgcctgtgggctgaa
tccccagaaatgttagagaacgcagacagtggtgcattcacttggcttaatgagctaatc
tggcgtgagttttatcgccatttattagtggcctatccccgtttatgccaacatcatccc
tttattggctggactgatgggttagtatggaaccgatctgaatcgcaattgaaagcctgg
cagcaggggcaaaccggttatcccatcgttgatgccgcgatgcgtcaaatgaatgaaact
ggctggatgcataatcgccttcgcatgatcagcgccagttttttggttaaagacctgttg
atcgactggcggcaaggtgagcgttattttatgtcacaattggtggatggggacttagcc
gcgaataatggcggctggcaatgggccgcatcaaccggtaccgatgccgcaccgtatttt
cgtatttttaatcccaccacgcagggcgagcggtttgataaggacggggtatttattcgt
cgttggttaccggagctggctgcggtaccagacagtgatattcatcagccatggcgctgg
gcagaacggcaacagcagcatctggattatcctgtcccgttggttgatcacaagcaagcc
agattggctacactcgcggcatttgaagccgctaagcgggatagcacaaggatccctaat
cgcaaggagccttcatgttattga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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