KEGG   Yersinia pestis Harbin 35 (biovar Medievalis): YPC_4167
Entry
YPC_4167          CDS       T01874                                 
Symbol
holD
Name
(GenBank) DNA polymerase III, psi subunit
  KO
K02344  DNA polymerase III subunit psi [EC:2.7.7.7]
Organism
yph  Yersinia pestis Harbin 35 (biovar Medievalis)
Pathway
yph03030  DNA replication
yph03430  Mismatch repair
yph03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:yph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    YPC_4167 (holD)
   03430 Mismatch repair
    YPC_4167 (holD)
   03440 Homologous recombination
    YPC_4167 (holD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yph03032]
    YPC_4167 (holD)
   03400 DNA repair and recombination proteins [BR:yph03400]
    YPC_4167 (holD)
Enzymes [BR:yph01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     YPC_4167 (holD)
DNA replication proteins [BR:yph03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     YPC_4167 (holD)
DNA repair and recombination proteins [BR:yph03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     YPC_4167 (holD)
SSDB
Motif
Pfam: DNA_III_psi Phage_TAC_6 CSTF_C
Other DBs
NCBI-ProteinID: ADW00582
Position
complement(4034678..4035115)
AA seq 145 aa
MASRRDLLLQQLGITQWVLRRPAVLQGEIAIHLPEDTRLLIVAQQLPEHGDPLLCDVLRS
LGLTPHQVYALTPDQVAMLPEDTQCNSWRLGISEPLAVAGAQLHSPELAGLYQDAGAKRA
LWQQICHYEADFYPDASRSGHSIPN
NT seq 438 nt   +upstreamnt  +downstreamnt
atggcatcaagacgagacttgctgttacagcagcttggcattacgcagtgggtattgcgc
cgtcctgccgtcttgcagggtgagattgcaatacatttacctgaagatacccgcctactg
attgtggcacagcaactgcctgaacacggtgatccactgttgtgcgatgtgctacgcagt
ttgggcctaaccccccatcaggtttatgccttgacgccggatcaggtcgcgatgttgccg
gaagatacgcagtgcaacagttggcgattgggcatcagtgagccgcttgcggtggccggt
gcacaattacatagcccagaattagctgggctttatcaagatgcgggcgctaagcgcgca
ctttggcagcagatttgtcattatgaagcagatttctatcctgacgccagccgatctggc
cacagcataccaaattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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