KEGG   Yersinia pseudotuberculosis IP 31758 (serotype O 1b): YpsIP31758_3653
Entry
YpsIP31758_3653   CDS       T00570                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
ypi  Yersinia pseudotuberculosis IP 31758 (serotype O:1b)
Pathway
ypi02024  Quorum sensing
ypi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ypi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YpsIP31758_3653 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    YpsIP31758_3653 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ypi03019]
    YpsIP31758_3653 (hfq)
   03036 Chromosome and associated proteins [BR:ypi03036]
    YpsIP31758_3653 (hfq)
Messenger RNA biogenesis [BR:ypi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     YpsIP31758_3653 (hfq)
Chromosome and associated proteins [BR:ypi03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    YpsIP31758_3653 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ABS46019
UniProt: A7FMX9
Position
complement(4118030..4118335)
AA seq 101 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNTPSGSTNNYHGSNPSAPQQPQQDSDDAE
NT seq 306 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttgcaagatccgttcctgaacgcattgcgtcgtgaacgggtt
ccggtttctatttatttagtgaatggtattaaactgcagggccaagttgagtcttttgat
cagtttgtcattctgttaaaaaatacagtcagccagatggtttataagcacgccatctct
actgttgtgccttctcgtccggtttcgcatcacagcaatactccgagcggtagcaccaat
aattatcatggtagtaatccgtctgcgccgcaacagccgcagcaggacagtgatgacgct
gaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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