KEGG   Yersinia pestis Harbin35: CH55_166
Entry
CH55_166          CDS       T03717                                 
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
ypj  Yersinia pestis Harbin35
Pathway
ypj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ypj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CH55_166
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ypj03019]
    CH55_166
   03009 Ribosome biogenesis [BR:ypj03009]
    CH55_166
Enzymes [BR:ypj01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     CH55_166
Messenger RNA biogenesis [BR:ypj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CH55_166
Ribosome biogenesis [BR:ypj03009]
 Prokaryotic type
  rRNA processing factors
   CH55_166
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: AJK06864
UniProt: Q8D0Q9
Position
complement(190598..194248)
AA seq 1216 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPP
EEAPTVAKAKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSE
NRRNDRRNPRRQNNGRKERNDRTPREGRDNSSRDNTNRDNTSRDNANRDGANRDNSNRDN
SGRDNVSREGREDQRRNNRRPAQPTTTSQGQTEVVEADKAQREEQPQRRGDRQRRRQDEK
RQAPQEIKADVAEAPVIEEVQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNTLESPVS
APVAQVVVAEVQEEVKLLPQITAQTDDDSANERTTNNENGMPRRSRRSPRHLRVSGQRRR
RYRDERYPAQSAMPLAGAFASPEMASGKVWVRYPVTPVVEQVVVEQIAIEQTTTVEQTAI
VEQVSVANIVTAQLPVEQVQNTVAEQESSATPSVMTTPTVAVATAAVTLAPQHKPGGSSS
SAAAVPGRAPIVAAVPVVAETTAAETVVAKTEAAIDAVAVVEPMAAVESIAAVETATVEP
VVTEEPNVTEPAVAEPAIETDPVEETTSVVEIAPTVEPTPMIEDTAVVVAATVVDTTPET
ASTVQDDIVEETAVEAVNISETVAEETAITEPAAEAIATQQTTIAQETIAEPTVETAIDV
VAVVKQPAVAHPEGVVFKHFASAPMTKAPAPDYAPESPTKGHWERPTFDFSGKGSAGGHA
AATQATAPATKPQSVE
NT seq 3651 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttgattaacgcgactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatctggatattgaaagcccaggccatgaacagaaaaaagcgaat
atttataaaggtaaaatcacccgaatcgaacctagtctggaagccgcttttgttgattat
ggcgcggaacgacatggtttccttccattaaaagaaatctctcgcgagtacttccccaat
aattactcttcccatggccgcccaaacatcaaagatgtcttgcgtgaaggccaggaagtt
attgttcaggttgataaagaagaacgcggcaataaaggtgctgcattgaccactttcatt
agtctggctggcagctatttggttctgatgccaaacaacccacgtgcgggcggtatttct
cgccgcatcgaaggtgatgaccgcaccgagctgaaagaagccctatcttccctgcaatta
cctgatggcatgggtctgattgttcgtactgcgggtgtgggcaaatctgctgacgcactg
caatgggatttgtcattccgcctgaagcactgggatgcgattaaaaaagcggctgaaggt
cgccccgcgcccttcttaatccatcaggaaagtaacgtgatcgtccgtgctttccgcgat
tacctgcgcccagatatcggcgaaatcctgattgataatccgaaggttctcgaactggca
aaagagcatattgctgcccttggtcgcccggatttcagcagcaaaatcaaattgtatagc
ggtgaaattccgttattcagtcattatcaaattgagtcgcagatcgaatcggccttccaa
cgtgaagtgcgtttgccttctggtggctctatcgttattgacacgaccgaagcactgacg
gcgattgatatcaactcagcccgagccacacgtggtggtgatatcgaagagaccgcgttt
aataccaaccttgaagccgctgacgaaattgctcgccaattacgtttacgtgaccttggt
ggtctgatcgttatcgacttcattgatatgaccccggtacgccatcaacgtgaagttgaa
aaccgtttacgcgatgctgtccgtcaggaccgtgcccgtatccagattggtcgtatctca
cgctttggtttgctggaaatgtcccgtcagcgcctcagcccatcgctgggtgaatccagt
caccacgtctgcccacgctgtagcggtaccggcaccgtacgtgacaatgaatcgctgtca
ctttctattctgcgtttgattgaagaagaagcgctgaaagagaatacccatgaagttcac
gccatcgtaccggtacaaatcgcatcgtacctgttgaacgaaaaacgtgaatcagtaaac
gctattgagaagcgtcaaggtggggtccgtgccgtgatcgtgccaaacgatcagatgcaa
acaccgcactactctgtcctgcgcgtacgcaaaggcgaagaagtcccgtctctcagctat
ctgttgccacaactgcacgaagcagaaatggcgcaaccgctggaagaggccaccattgaa
cgtaagcgcccagaacaaccagcattggctaccttctctctgccaacagaagtgccacca
gaggaggcccctaccgtagccaaggctaaacctgcggttgcaacacccgccgcggttagt
actgacgtagaacaacctggcttctttagccgtttgttcagtggcttaaaaaatatgttt
ggtgcttccgctgaagcagaagtgcaacccgctgaagttgtaaaaaccgacactagcgaa
aatcgccgtaatgatcgccgcaatcctcgccgccagaataatggccgtaaagagcgcaat
gatcgtactccacgcgaaggtcgtgataattccagccgcgataacaccaaccgtgataac
accagtcgtgataacgctaaccgcgatggcgctaatcgtgataattccaatcgcgacaac
agtggccgcgataacgttagtcgtgaaggccgcgaagatcaacgccgcaacaacagacgt
ccggcccagccaacgacaacatcgcaagggcaaactgaggttgttgaagccgataaagcg
caacgtgaagaacaaccacagcgccgtggtgaccgtcagcgtcgtcgtcaggatgagaag
cgtcaggcaccacaagaaatcaaagcagatgttgcggaagcccctgttatagaagaggta
caacctgagcaagaagaacgccaacaggttatgcaacgtcgtcagcgtcgccagttgaat
cagaaagtccgtattcaatcggcaaatgatgagctgaatacgttggaatctcctgtcagt
gcacctgttgcgcaggtggtggtggctgaagtacaagaagaagtgaagttactgccacaa
attactgctcaaactgatgatgacagtgctaatgaacgtactaccaataatgaaaatggt
atgccacgtcgttcccgtcgttcaccacgccatctgcgtgttagtggtcaacgccgtcgc
cgttatcgtgatgaacgttacccggcacaatcggccatgcctctggcaggggcttttgcc
tcaccagaaatggcatccggtaaagtgtgggttcgttatccagtgacgccagtcgttgaa
caggttgtcgttgaacaaatcgccattgaacaaactacaaccgttgagcaaacagccatc
gtcgagcaggtcagtgtagcgaatattgtcactgcgcaattgcctgtagagcaggtgcaa
aacaccgttgcagaacaagaatcgagtgcaactccatctgttatgacaacaccaaccgtt
gcggttgccaccgcagcggtaacactggccccacaacacaaaccggggggttcttcatct
tcggctgctgcggttccaggccgtgcacctatcgttgctgcagtgcctgtcgttgctgaa
acgactgctgctgaaacggttgttgctaaaactgaagccgctattgatgcggtggctgtt
gtggaaccgatggctgctgtggaatcgatagctgctgtggaaactgcaactgtagaaccg
gttgttacagaagaaccgaatgtcacagaaccggccgttgccgagccagcgattgaaact
gatcctgtcgaagaaacaacatcagttgtagagattgctccaaccgttgaaccaacgcct
atgatcgaagatacggctgttgtagtcgctgcgacggtggttgacactacaccagaaact
gcgtcaaccgtgcaagatgatattgttgaagagacagcagttgaagcggtaaatatctct
gaaactgtggctgaagagaccgcaataacggaacctgctgctgaagccattgctactcag
caaaccactattgcgcaggagaccattgctgaaccaacggttgaaaccgctattgatgtg
gttgcggtagtcaaacaacccgcggttgcgcatccggaaggggtggtgttcaaacacttc
gcttcagcgccaatgaccaaagcgccagcacctgattacgcccctgaatcaccgaccaaa
ggtcactgggagcgtccaacctttgatttctcaggcaaaggttctgctgggggtcatgcc
gcggctacccaggcaactgcacccgcgaccaaaccgcaatctgttgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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