KEGG   Yersinia pestis KIM10+ (biovar Mediaevalis): y0630
Entry
y0630             CDS       T00092                                 
Symbol
hfq
Name
(GenBank) putative host factor I for bacteriophage Q beta replication
  KO
K03666  host factor-I protein
Organism
ypk  Yersinia pestis KIM10+ (biovar Mediaevalis)
Pathway
ypk02024  Quorum sensing
ypk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ypk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    y0630 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    y0630 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ypk03019]
    y0630 (hfq)
   03036 Chromosome and associated proteins [BR:ypk03036]
    y0630 (hfq)
Messenger RNA biogenesis [BR:ypk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     y0630 (hfq)
Chromosome and associated proteins [BR:ypk03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    y0630 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AAM84218
UniProt: Q8ZIW2
Position
713304..713609
AA seq 101 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNTPSGSTNNYHGSNPSAPQQPQQDSDDAE
NT seq 306 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttgcaagatccgttcctgaacgcattgcgtcgtgaacgggtt
ccggtttctatttatttagtgaatggtattaaactgcagggccaagttgagtcttttgat
cagtttgtcattctgttaaaaaatacagtcagccagatggtttataagcacgccatctct
actgttgtgccttctcgtccggtttcgcatcacagcaatactccgagcggtagcaccaat
aattatcatggtagtaatccgtctgcgccgcaacagccgcagcaggacagtgatgacgct
gaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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