KEGG   Yersinia pestis KIM10+ (biovar Mediaevalis): y3164
Entry
y3164             CDS       T00092                                 
Symbol
recB
Name
(GenBank) DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
ypk  Yersinia pestis KIM10+ (biovar Mediaevalis)
Pathway
ypk03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ypk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    y3164 (recB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ypk03400]
    y3164 (recB)
Enzymes [BR:ypk01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     y3164 (recB)
DNA repair and recombination proteins [BR:ypk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     y3164 (recB)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 vWA-TerF-like AAA_11
Other DBs
NCBI-ProteinID: AAM86714
UniProt: Q8CZY3
Position
complement(3477093..3480818)
AA seq 1241 aa
MDDLSNHFRFTGYAAAEGIGTMTPTTPQRLEPLALPLYGERLIEASAGTGKTFTIGVLYL
RLLLGLGGDAAFRRPLMVEEILVVTFTEAATEELRGRIRDNIHGLRIACVRGVSDDPMYQ
ALLAEITDWAVAAAQLLAAERQMDEAAIYTIHGFCQRMLANNAFESGILFEQTLVQDELP
LWRQACADFWRRHCYPLPLVIARAVSQEWSGPEALLSDLSAYLQGETPKFRQAPGDDETI
LSRHQHVVTQIDALKAEWRLAAPELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETE
DYQLPKELEKFRQSVLLEKTKKGAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSV
QQEKRQRAELGFDDLLSKLDAALQQSGGELLAQSIRTRYPVAMIDEFQDTDPQQYRIFHT
VYGGQEACALLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYTLETNWRSSFPMVQSVNR
LFSLVNTPFLFEQIPFINVAAAKKNHDLSFEIKGEKQPALHFWLQPGDGVGVSEYQQVMA
RQCAAQIRDWLTAGQQGQAELLTTKGPKPVQASDITILVRSRAEAALIRDALSALAIPSV
YLSNRDSVFETTEAKDLLWLLQAVLAPEQERALRSAMATGILGLDARMLDALNHDERAWD
ALVDEFDHYRQHWQRRGVLPMLREMMARRHLAENLLATPGGERRLTDLLHLGELLQEAAS
QLDSEHALIRWLAQQIAQPNPQSDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGN
FRQQQNVLYHDRHSFEALLDLNADEESQALAEEERLAEDLRLLYVALTRSVYHCSVGIAP
LIKGGRKKQGESDMHRSALGYLVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEPPDDK
PWQPQPEALPELTARHFTRKMQDYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGAPLQV
LLPRLDIDAVGEQAVVTEDDHLTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLSERLQ
QQGFSEQWAPVLHQWLNDIVQTPLTDTGATLAGLSPERKQAELQFYLPIDSLLRAEVLDR
LIKQYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSRAYTVEAM
TQAMAEHRYDLQYQLYTLALHRYLRHRLADYDYQRHFGGVIYLFLRGVDQQHSGHGIFNC
RPEQKLIEEMDRLFSGTIGSNATASDKSGSNVIHSGERASR
NT seq 3726 nt   +upstreamnt  +downstreamnt
atggacgacttatccaaccacttccgctttacaggctacgctgccgcagaaggtattggc
accatgacacccacgactccccagcggcttgagccgctggcgcttcccctctatggcgag
aggctgatagaagcctctgccggtactggtaagacatttaccatcggggtcctttatctt
agattgttgcttgggttagggggcgatgctgcattccgtcgccctttgatggtggaggaa
atcctagtggtgacctttactgaagccgcgaccgaagagctcagggggcgaattcgcgat
aatattcatgggttgcgtatcgcttgcgttcggggagtcagtgatgacccaatgtaccag
gctctattagccgaaatcaccgattgggccgtagccgccgcgcaattattggcggctgag
cgtcagatggatgaagccgcgatttacactattcatggtttctgccaaagaatgctggca
aataacgcttttgaatccggcattttattcgaacaaacgttagttcaggatgaactcccg
ttatggcggcaggcctgtgctgacttctggcggcgtcattgttatccgcttcccttagtc
atcgcacgggcggtcagtcaggagtggagcgggccggaggcattactcagtgatctgagt
gcttatttacaaggtgaaacgccaaagtttcggcaagcgcccggtgacgatgaaacgatc
cttagccgccatcagcacgttgtgacacagattgatgcacttaaagcagagtggcgctta
gccgcccctgaattagaagcattaattagtcgttctggcgttgataaacgcagttatagc
agcaagcacttacccaactggctggaaaaagtaggattatgggcggagcaggaaacggaa
gattatcaattacccaaagaactggaaaaatttcgccagtcggtgttattggaaaagacc
aagaagggagccgccccacaacatactttatttagtgcgatagactcgatatttgaacag
cccctaacgttgagggatcttattttagcccgagccatcagcgaaatacggttttctgta
cagcaggaaaaacggcagcgtgcagagctggggtttgatgatttactcagtaagttagat
gccgcattacaacaatcggggggtgagttgctcgcccaatctattcgtacccgttatccc
gttgcaatgattgatgaatttcaggataccgacccgcaacaataccgcattttccacacc
gtttatggcgggcaagaagcgtgcgctttactgttgatcggtgatcctaaacaggctatt
tatgcttttcgtggcgcagatatatttacctatattcgcgcccgttcagaagtaagcgcc
cactacacattggaaaccaactggcgctcttcttttcccatggtgcaatcagtgaacagg
ctatttagtctggttaatacgcctttcttatttgagcaaatcccctttattaatgtcgcc
gccgccaaaaagaatcatgatttatcctttgaaattaaaggagaaaagcaacctgcgcta
catttttggctgcaacccggtgacggtgttggtgtaagtgagtaccaacaagtaatggct
agacaatgtgcagcgcaaattcgtgattggttgactgccggccagcaggggcaagcagaa
ctactgaccacgaaaggaccaaaaccggttcaggcatcagatataaccatactggtgcgt
agccgggcagaggccgcattgatacgtgatgcacttagtgcgctggcgatcccatcggtc
tatttatctaatcgtgacagtgtctttgagactacagaagccaaagatctcttgtggtta
ctgcaagccgtgttagcaccagagcaggagcgcgcactacgtagtgctatggctacgggg
atcttggggttggatgccagaatgttggatgcgttaaatcacgatgagcgagcttgggat
gcgctggtcgatgagtttgatcactatcgccagcattggcagcgccgtggggtattaccc
atgctgcgggagatgatggcccgccgccatttagctgaaaacttgttggcaacacccggt
ggggagcgtcggctgacagatttactacatcttggggaattactgcaagaggccgcctcg
caactggatagtgagcacgcactaattcgctggttggcccagcaaattgctcaacccaat
ccccagtcagatagccaacaattacgcttggaaagtgatcgccatttggttcgagtggtt
actatccataaatcgaaagggttggaatatccattagtttggctgccttttatcggtaat
tttcggcaacaacagaatgtgctttaccatgaccgacatagctttgaggctttactcgat
cttaatgctgatgaagaaagccaggctttagctgaagaagaacgtctggctgaggattta
cggctattgtatgtcgcgttgacgcgttcggtttatcattgcagcgtgggcattgcaccg
ctgattaaaggggggaggaaaaagcaaggcgagagtgatatgcatcgcagtgcgttaggt
tatttggttcagcatggtcaacccggtgatgctcatgttctaagcgaaaagttaactgag
ttagcgcgctcatcgaatggtgatatttgcgtttcgcccgttgagcctcctgatgataaa
ccttggcaaccacagcccgaagccttgcctgaacttaccgcccgccattttactcgaaaa
atgcaagattattggcgcgtaaccagctattcaggtttacagcagtctggctctacaaag
aagctgtatggttctgcaacaggggacgtatcgcaggctctgggggcaccattacaggtc
ttgttgccacggttggacattgatgccgtaggtgagcaggcggtggtgacagaagacgat
catttaacacctcataccttccctcggggagcggccccagggactttcttacatgatttg
cttgagccattagattttagtcaaccgattgaattggcgtggttgtctgagcggctacag
caacagggttttagcgaacagtgggcaccggtgttacaccagtggctaaatgatatagtg
caaacgccgcttaccgataccggggccactttggctgggttgtcgccagagcgcaaacag
gccgagctacaattttatctacccatcgatagcctgctacgggccgaggtattagaccgt
ttaatcaaacagtatgatccactttcccggcagtgccctgtattggattttcaacaggtt
agagggatgctcaaggggtttattgacttggttttttgctggcaggggcaatattacttg
ctggattacaaatccaattggttgggtgaggacagtcgtgcttataccgttgaggcgatg
acacaagcgatggctgaacatcgctatgatctgcaataccaactttatactttggcttta
caccgctatttacgccatcgtttggccgattatgactatcaacgccactttggtggggtt
atttacctcttcttgcgcggcgttgatcagcaacattcagggcacggtatttttaattgc
cggcctgaacagaaactgattgaagaaatggatcgcttattcagtggcacaattggcagt
aacgcaaccgcgagtgacaaaagcggtagcaatgtcattcacagcggcgagagggcatca
cgatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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