KEGG   Yersinia pestis El Dorado: CH46_4235
Entry
CH46_4235         CDS       T03719                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
ypl  Yersinia pestis El Dorado
Pathway
ypl03030  DNA replication
ypl03430  Mismatch repair
ypl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ypl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CH46_4235 (dnaE)
   03430 Mismatch repair
    CH46_4235 (dnaE)
   03440 Homologous recombination
    CH46_4235 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ypl03032]
    CH46_4235 (dnaE)
   03400 DNA repair and recombination proteins [BR:ypl03400]
    CH46_4235 (dnaE)
Enzymes [BR:ypl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CH46_4235 (dnaE)
DNA replication proteins [BR:ypl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     CH46_4235 (dnaE)
DNA repair and recombination proteins [BR:ypl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     CH46_4235 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger HHH_6 PHP
Other DBs
NCBI-ProteinID: AJJ12988
Position
pMT:6403..9516
AA seq 1037 aa
MKALMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAAGDDMAVIC
GVKLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKR
EQFYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQRRDFAKIIGTLVTAGGRDNFYSVVY
PHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQPHRL
RIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPALPK
MADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFCGYFLM
VRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLDLPDAD
LDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVDAADMAVSKEFK
NLEDDSLSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVER
TPVELRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKESTGEDINLDAIPL
DDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGM
LDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAI
GKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGV
KLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPA
EFFAAALTILGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAV
KGCSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACACNSRVRESLQKVGAFASIEPGS
LPATDPERLRDQAELMGNLVIDAVKASRPFEMNPKRSAEVNVLMTRMAAEMGLGVTNGAI
VIHTQRLKSDPGGNLLS
NT seq 3114 nt   +upstreamnt  +downstreamnt
atgaaggctctgatggtcagaactgacttctccctgggagagtcagctctaaaagcagaa
aacgcggtgaaaatcgcgagagacgctggctacactgctgtcatttccgctgacagcatg
aacattgccagtgtgattcccctgcagcgtgccgctggcgacgatatggcggttatttgt
ggtgttaagctgaatgtggtcgacgatccgacatacgagcaccgcgcccgccttgcgaaa
gaatcagagagatgtatggaatcattggtgcgtgatcgcagctactgcttcacggcactg
ataaagaatgagcaaggttatcgcgacgtgtgcgaactgatgaccttagcgaacaagcgc
gagcaattctactttgtcccgcgtctggcgctcgaccaactggcggccgcgtatgccaaa
ggcaacatcatcctgctgacgtccgacattggcagtgtattccagcgccgggacttcgca
aagattatcgggacgctggtcacagctggaggacgcgataacttctacagcgtggtttat
ccgcaccctaccccattctacgaccagattaacgtccgggcgatgaaagtagcgagcgca
ctgaaaatagagccagtggcgttctatcccgcttattacgaagcggtcgacgacgctgac
attaaagacattgcgcacatggttacgaacaacatcaaaatcgaccagccgcatcgtctg
cgtattccccaccagcgagataacgccgttaatggtcgccgccatctccttgaagcgctg
aaagccttctccgttcgcatggatgtaccggtaacagctgcaatggcctcaacaacgcag
gacaccattatcgaagcctgcacatggcgctggcatgaattgccaccagcactgcccaag
atggcagacgacgagcctgcaacgctgatgaagctggctgtcgcggggctgcgcaagcgt
cttactaccaaagagtttggctacacaccaccggcttctgagcaccgcgtgtatgttgat
cgtctgaagtacgaaatggacacgctgacccgtctgggcttctgtggctacttcctgatg
gtgcgcgacctgatgaatcacagccgtgaaactggcattcctgtcgggccaggtcgtggt
tcctctgccggttctctggtggcgtggtgcatcggcataaccaacgtcgatcctatccgt
cacggtcttctgtttgagcgtttcatcaaccctgaacgtctcgacttaccggatgcggat
ctggacttcagccaggcacgtcgccatgaggtgatcgagtatctgaatgaacgctatggc
gaagattacgttgccggtattccgaacttcacctatctgggcgcggcttctgcgctgcgt
gacaccgcacgtatttacggtgtcgatgctgcggatatggcggtatccaaagagttcaag
aatctggaggacgatagcctgtcgctggaagagctgcgcgagcaactggccagcctggac
aaatacgccacgaaatacccggaagcgttcaaagcggcgtgtaagctgcaaagcctgatg
cgtggttttggtcgccacgctgcggggatgatcgtcgctggcgttccactggtagagcgc
acgcccgtcgagctgcgtggcaatgctcgctgtattgcattcgataaacgttactgcgag
gcgatggggctgattaagctggacgttctcggtctggcaacgctcgatctgttggatagc
gcgaaacgctacatcaaagagagtaccggggaagacatcaatctcgatgctatcccactg
gacgatcgtaaggttctggatgggttcgctgcagggtacacgcagggcgtattccagctg
gagtccggtcccatgcgcaagctgcttaaagatctgggcggtggcatcgagccaatgagc
ttcaaaaccgttgtcgccacgaccgcactcttccgacctggcccgattcaatccggcatg
ttggacgactatgtctccgtggccaaaggcttcatggctccacagtcgctgcacccggta
ctggacgagcttaccgcggaaaccaacggcgtgattctgtatcaggaacagacgatgaac
gcgacacgattgctggccggtttcacgatggccgaagcagatggtgtacgtaaagcgatc
ggtaaaaaggatatggaaaagatgaagagcatgggcgagaagttcgtcgttcaggctcaa
gctggttggatcgacgttgagatggaagacggcaccacgcagcgtattcaccgcgcggaa
cacttcaaatgtgaggacggcgcactgcggacggtcgaagaagcgctggaggcaggtgtg
aaattgccgatggctgctgtacgcgttacagggtcacaaccgggcttgtctgagacgaaa
gctaaggagatctgggatgccttcgagaagaacggtgcgtatcagttcaacaaatcacat
cccgttgcctactcgctgatcagctatcagtctatgtggttaaagacacattaccctgct
gagtttttcgctgctgcgctcaccattctgggcgaggataagcaccaggggctggttaag
gatgcgctgacctatggcattcacgtattgccaccagacgttaacgtgtcatctaaccga
attgagatccgcacgctggaagacggcagccaggttctgtatgcgccattctctgctgta
aaaggctgctctgagaatggttgccaggccatcatgagagcgcgtgagaaagttggcggc
aaattcgagtcacttgagcaatttgaggaagcggtcgagaagcgtgcgtgtgcgtgtaac
agccgggtacgcgagtcactgcaaaaagtaggtgcgttcgcatcgattgagcctggcagt
ctgccagcgacagatccggaacggctgcgcgaccaggctgaattgatgggcaatctggtg
atcgacgctgtaaaagcctctcgaccgttcgagatgaaccctaaacgctctgccgaagtg
aatgtactgatgacacgcatggcggctgaaatgggtctgggtgtaacgaacggtgcaata
gtgatccacacccaacgcctgaaatcagatccagggggtaatctgctctcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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