KEGG T00165: YP

Yersinia pestis 91001 (biovar Microtus): YP_1918

Entry

YP_1918           CDS       T00165

Symbol

rnd

Name

(GenBank) ribonuclease D

K03684

ribonuclease D [EC:3.1.13.5]

Organism

ypm Yersinia pestis 91001 (biovar Microtus)

Brite

KEGG Orthology (KO) [BR:ypm00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ypm03016]
    YP_1918 (rnd)
Enzymes [BR:ypm01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     YP_1918 (rnd)
Transfer RNA biogenesis [BR:ypm03016]
Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    YP_1918 (rnd)

SSDB

Motif

Pfam:

DNA_pol_A_exo1 RNAseD_HRDC_C HRDC

Other DBs

NCBI-ProteinID:

AAS62136

UniProt:

Q8D0F7

Position

2138185..2139345

AA seq 386 aa
MKDNGYNDQENDVLNYQLITTNNALQQVCEQARTHAHIALDTEFVRTRTYYPQLGLIQLY
DGEQLSLIDPLPITEWQPFRALLQDLNVVKYLHAGSEDLEVFLNAFDQMPTPMIDTQVLA
AFSGRSLSCGFAMLVAEFEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLV
EATEAAGRMDAAKDECLLLCRRRSETLDPELAYREITNAWQLRGHQLACLQKLAEWRLRQ
ARERDLAVNFVVREEHLWQVARYQPTSLGELDSLGLSGQEIRYHGRTLLALVAEGNAVPE
DQLPPPIANLIDQPGYKKVFKDIKALIQSVSERSGLSSELLASRRQINQLLNWHWKLKLS
DAQPELLTGWRGDLLSSELLEILQHY

NT seq 1161 nt +upstreamnt +downstreamnt
ttgaaagataacggatataacgaccaagagaatgacgttttgaattatcagttgatcacg
accaataacgcattgcaacaggtctgcgaacaagcccggacacatgctcacatcgcgttg
gatacagagtttgtcagaacgcgcacttactaccctcagttgggtttgattcaactgtat
gatggtgaacaactctcacttatagatccattacctatcacggaatggcagccttttcgc
gcgttactgcaagatctgaatgtggtgaaatatttacacgcaggcagtgaagatctcgaa
gtgtttttaaacgcttttgaccagatgccaaccccgatgattgatactcaggtattagcg
gcattttctggccgtagcctatcctgcggctttgccatgctggtggctgagtttgaaggt
gttgagttagataaaagtgaatcacgtacagactggattgcccggccgttgagtgaaaaa
cagtgcgattatgcggcggctgatgtgttttatcttttacctctggcggctaaattagtc
gaagccactgaggcggcagggcggatggacgcggcgaaagacgaatgtctattgctgtgc
cgccgtcggagtgagacgctcgatcctgaactggcttaccgtgagattaccaatgcctgg
caactccgtggccatcaactggcatgtttgcagaaattagccgaatggcgtttacgtcag
gcacgggagcgggatttggcggttaactttgtggttagggaagagcacctgtggcaagtt
gcccgctatcaaccaacatcactcggtgagttagattctcttggcttgagtgggcaggag
atccgctatcacgggcgaacattgctggcactggtcgccgaagggaatgccgtccctgaa
gatcagcttcctcccccgattgctaacttgattgaccaaccggggtacaaaaaagtcttt
aaagatattaaagccttgattcaatcggtcagtgaacgtagcggattaagcagtgaatta
ctggcatcacgtcgccaaattaatcagttactcaattggcactggaagttgaagctttca
gatgctcaacctgaattattaacaggctggcgtggcgatttattgtcttctgaattgctt
gaaatcttacaacactattaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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