KEGG   Yersinia pseudotuberculosis IP 32953 (serotype 1): BZ17_895
Entry
BZ17_895          CDS       T03832                                 
Symbol
rafR
Name
(GenBank) HTH-type transcriptional regulator rafR
  KO
K02529  LacI family transcriptional regulator, galactose operon repressor
Organism
ypo  Yersinia pseudotuberculosis IP 32953 (serotype 1)
Brite
KEGG Orthology (KO) [BR:ypo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ypo03000]
    BZ17_895 (rafR)
Transcription factors [BR:ypo03000]
 Prokaryotic type
  Helix-turn-helix
   LacI family
    BZ17_895 (rafR)
SSDB
Motif
Pfam: Peripla_BP_1 Peripla_BP_3 LacI Peripla_BP_4 HTH_8 HTH_24 HTH_38 HTH_AsnC-type HTH_23 HTH_28 HTH_50 HTH_IclR HTH_3 HTH_Crp_2 HTH_Tnp_ISL3 HTH_36 Sigma54_DBD HTH_35
Other DBs
NCBI-ProteinID: AJJ55115
UniProt: Q66C06
Position
complement(935842..936858)
AA seq 338 aa
MSLKKIANELGLSSTTVSRALNGYDDVAAETRERIIDAAKRLGYQPNSLARRLKMGRTDA
IALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDA
LIVAHTQPEDFRLQYLQKQNFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELGHQR
IAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPP
TAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGLPDDSLLDIAVTPIVQNTRTSVGK
QIASMICDLLGGKDPKELQVLWQPEIGEGETDGVNRRG
NT seq 1017 nt   +upstreamnt  +downstreamnt
atgtcattgaagaaaattgcaaatgagcttgggctgtcctccacaacggtaagccgcgcg
ttaaatggctatgatgatgttgcggccgaaacacgtgagcggattatcgatgcggccaag
agattgggttatcaaccgaattccttagctcggcggcttaaaatggggagaaccgatgcc
attgctttggcgtatccatcacgtccacgagtgttgaataattcgacatttttggaaatg
ataagttggataggtatcgaactcggaaaacggggtctcgatctgttgctcattcctgat
gaacctggtgagaaataccagtcacttatccacttggtggaaacgcgtagagtggatgca
ttgatcgtggctcatacccagcctgaagactttcggttgcagtatttgcagaaacaaaac
tttccttttttggcattggggcgtagccatttacccaagccatatgcatggtttgatttt
gataatcacgctggcgcttcgttggcagtgaagcggcttctcgaacttgggcaccagaga
attgcatttgtgagtaccgatgcaaggatttcatatgtcgatcagcgtttgcagggatat
gtgcagacgatgtccgaagcgggcctgatgccgttggcagggtatctgcaaaaagcggat
cccactcgtcctggcggttatcttgctgcctcgcgtttattggcgcttgaggttcctcct
actgccattatcaccgactgtaatatgctgggtgatggcgtggcgagtgcgcttgataaa
gcgggcttgttgggcggcgaggggatatcgcttatcgcttatgatgggctaccggatgat
agtttgttagatattgccgtgacccctattgttcaaaatacgcgtaccagtgtaggtaaa
caaattgcatcaatgatttgtgatttactgggggggaaggatcctaaagaactacaggtc
ctctggcagccagaaataggagagggtgaaaccgacggggtgaatcgacgtggataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (25)   

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