KEGG T00505: YPDSF

Yersinia pestis Pestoides F (biovar Antiqua): YPDSF_0003

Entry

YPDSF_0003        CDS       T00505

Name

(GenBank) DNA replication and repair protein RecF

K03629

DNA replication and repair protein RecF

Organism

ypp Yersinia pestis Pestoides F (biovar Antiqua)

Pathway

ypp03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:ypp00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    YPDSF_0003
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ypp03400]
    YPDSF_0003
DNA repair and recombination proteins [BR:ypp03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     YPDSF_0003

SSDB

Motif

Pfam:

SMC_N AAA_21 AAA_23 AAA_15 AAA_27 AAA_29 AAA_16 ABC_tran AAA AAA_17 AAA_22

Other DBs

NCBI-ProteinID:

ABP38430

Position

2502..3779

AA seq 425 aa
MSSCQCVCSIYRAILLAPLRLGSARHPLVHEVRSGGCALAARKWPATITPLIRNKATLPS
IIRISFMALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRS
LQAGRVIRHECAEFVLHGRVDANEREASVGLSKSRQGDTKVRIDGTDGHKVAELAQMLPM
QLITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVSRYTQI
RAWDQEIIPLAERISEWRAAYSDAIAADISATCALFLPEFALSFSFQRGWDKESDYGELL
ARQFERDRALTYTAVGPHKADFRIRADGTPVEDLLSRGQLKLLMCALRLAQGEFLTRQSG
RRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVEHGK
IEVQP

NT seq 1278 nt +upstreamnt +downstreamnt
atgtcgtcatgccaatgcgtttgtagtatttatcgggctatcttgcttgcccctttgcga
ttgggcagtgctcgccatcctctcgtacatgaagtacgctccggtggctgcgcgctggcc
gcacgcaaatggcctgcgacgataacgcccttgatcagaaataaggcgacattgccttcg
atcataagaattagtttcatggctctaacgcgtttactcattaaagattttcgcaatatc
gaatcggcagacttggcgctggcggcgggctttaattttttagtcggccccaatggcagt
ggcaaaaccagtgtactcgaggcggtttatacccttggtcatggtagggcttttcgtagt
ttgcaagcaggcagagtgatacgtcacgaatgtgctgagtttgtgttgcatggccgggtt
gacgccaatgaacgtgaggcgtcagtgggtctgagcaaaagccgacagggtgataccaaa
gtgcgcattgatggcaccgatgggcataaagtggctgaattggcgcaaatgttgccaatg
cagttaatcactcctgaaggttttacgttattaaatggcgggccaaaattccggcgcgct
tttttagactggggttgctttcataatgaacccggtttttttacggcctggagcaaccta
aaaaggttactcaagcagcgcaacgccgcgctgcgccaggttagtcgctatacgcaaatc
cgggcttgggatcaggaaatcatccctctggctgagcgtatcagcgaatggcgagcggca
tacagtgacgcgattgcggcggatatttcagccacatgcgctctgttcctgccagagttc
gccctgagtttctctttccagcgcggctgggataaagagagtgactatggcgagttgttg
gcgcgccagtttgagcgtgacagagcgctaacgtataccgccgttgggccacataaagcg
gatttccgcattcgggccgatggtacgccggtagaagatttgctatcgcgtggtcagctt
aagttgctgatgtgcgcactgcggttagcgcagggtgagtttctcacccgacagagcggg
cggcgttgcctgtatctgcttgacgattttgcttccgaattggacaccggccgccgtcga
ttgctggccgagcgtttgaaagctacccaggcacaagtttttgtcagcgccgtgagcgct
gagcaagttgccgatatggtaggtgaaaagggcaagatgttccgtgtggaacatggcaaa
atagaggttcaaccatag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (18)   

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