KEGG   Yersinia pseudotuberculosis ATCC 6904: DJ40_3493
Entry
DJ40_3493         CDS       T03307                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
ypq  Yersinia pseudotuberculosis ATCC 6904
Pathway
ypq03030  DNA replication
ypq03430  Mismatch repair
ypq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ypq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DJ40_3493 (dnaE)
   03430 Mismatch repair
    DJ40_3493 (dnaE)
   03440 Homologous recombination
    DJ40_3493 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ypq03032]
    DJ40_3493 (dnaE)
   03400 DNA repair and recombination proteins [BR:ypq03400]
    DJ40_3493 (dnaE)
Enzymes [BR:ypq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     DJ40_3493 (dnaE)
DNA replication proteins [BR:ypq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     DJ40_3493 (dnaE)
DNA repair and recombination proteins [BR:ypq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     DJ40_3493 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP DNA_pol_IIIA_C HHH_6 tRNA_anti-codon MutS_II
Other DBs
NCBI-ProteinID: AIN13071
UniProt: A0A3G5KN00
Position
3946212..3949694
AA seq 1160 aa
MAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDW
LIKHKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQFM
RDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEMSTEDFLVEKAKQGL
EERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGMTLEKAFAAEPQ
LAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLAPIDIASIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPAEM
AKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLGPHRAALMS
SLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVVLDGERETLGLY
LTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQREDARARLRFGATWRVTPTD
RLLIDLRTLVGNEQVELEFD
NT seq 3483 nt   +upstreamnt  +downstreamnt
atggccgaacctcgttttgtccacctgcgtgttcatagcgattattccatgatcgatgga
ttagctaagattggacctttggtgaaaagagctgctgcattaggtatgcctgctctggct
attaccgattttactaacctctgtggcctggtgaaattctacggcagcgcgcatggtgcg
gggattaaacccatcatcggtgctgacttctacgtacaaagtgaaatactgggtgatgaa
ttagctcacctcacggttttggctcgcaataatgaaggttatcaaaatctgactttattg
atctcagaagcctaccaacggggttatggcgctgcgggtcctatcattgatcgcgattgg
ctgatcaaacataaagaaggactcattctgctgtctggtggccgaatgggggatgtaggc
aaatttctgctacggggtaaccaggttcaggttgatcaatgtctcgccttttatcaggaa
cactttccagactgctattacctcgaacttattcgaaccgggcgtccagacgaagaaaac
tatcttcatgctgccgtggcattggccactgagcgtggtttacctgtcgttgcgaccaat
gatgtgcgttttattgatgaatcggattttgatgcccatgaaatccgtgtcgctatccat
gatggttttacattggtcgatcctaaacggccgaagaattacagccctcagcagtttatg
cgcgatgaagaacagatgtgtgagctgttcgctgatattccagaagcgttgatcaacagc
gttgagatagccaaacgctgtaatgtcactattcgccttggggaatatttcttaccgcag
ttccccacaggggagatgagtacagaagattttctggtagaaaaagccaaacaaggtttg
gaagaacgtttggaatttctgtttccggaccctgaggttaggctgcaaaaacggccagaa
tatgatgaacgtctggatatcgagctcaaagttatcaaccaaatgggcttccctggttac
ttcctgattgtaatggagtttatccagtggtcgaaagataacggcgtaccggtggggccg
gggcgtggctctggtgcaggctcattggtggcttatgccctgaaaattactgatattgac
ccactggaatttgatctactgttcgagcgcttccttaatccggaacgtgtatcgatgcct
gacttcgacgttgacttctgtatggagaaacgtgatctggtgatcgaacacgtggcggaa
atgtatggccgcgatgcggtttcccagataattaccttcggtaccatggcggctaaagcg
gtcatccgcgatgtcggccgtgtattaggccatccctatggctttgttgatcggatctca
aaattaatcccactcgatccggggatgacactggaaaaagcgtttgcagcggagccacag
ctagctgaaatttatgaagctgatgaagaggtcagggcgctaattgatatggcgcgtaag
ctggaaggagtaacgcgaaacgccgggaaacatgctggaggcgtggttattgcccccact
aagattaccgattttgccccactctattgtgatgcggaaggcaataacccagttacgcag
tttgataaaaatgatgtggaatatgctgggctggtgaagtttgacttcctcggtctacgt
acactaactatcattaactgggcgttggagatgattaacgcccggcgcgctaaaactgga
ttagcgccaattgatatcgcctctattccgctggaggataaaaaaagcttcgatatgctg
caacgttcggaaacgacagcagtattccagctggaatccagagggatgaaagatttgatc
aagcgcctgaagcccgactgcttcgaggacatgatcgccttggtggcgttatttcgtccc
ggtccgttacaatcagggatggttgataactttattgaccgtaaacacggccgagaagcg
atatcttacccagatattgagtggcaacatgaatccttgaaacctgtgcttgagccgacc
tacggcattatcttgtatcaggaacaggtcatgcaaattgcgcaggttctgtccggctac
tcactgggtggtgcggacatgttgcgtcgtgccatgggtaagaaaaaccctgctgagatg
gctaagcagcgttctgtatttgaagatggtgcgaaaaatcagggtattgatggtgagctg
gcgattaaaatctttgacctggttgagaaatttgcaggttacggttttaacaaatctcac
tcggcagcttatgcattagtctcctatcaaacgttgtggttaaaagcccattatccggct
gaatttatggctgcagtaatgaccgctgatatggataatacggacaaagtggtcggcttg
gtcgatgaatgctggcgtatggggctgaaaattctgccccctgacatcaacagcggtttg
taccatttccatgtaaacgatgatggcgaaattgtttatggtattggtgccattaaaggt
gtaggtgaggggccgatagaagccattctggaggcgcgtaaagaggggggctattttaaa
gagttatttgacctatgcgcccgtgtcgataccaaaaagcttaacaagcgtattttagaa
aaactgatcatgtccggtgcatttgaccgtttggggccacaccgtgcagcattgatgagt
tctctcggggatgcgcttaaagccgcagatcaacatgctaaagccgaagcaattggtcag
gtagatatgtttggtgtattagccgacgcgcctgagcaggttgagcaatcctatgccaat
gtgccgccatggcaggagcaggttgttttagatggtgaacgggaaacgctggggctgtat
ttaactggccatccgatcactcagtacctcaaggaaatcgaacgctatgccggtgggatg
cgtttgaaggatatgcatccgacggatcggggcaaaatgaccaccgcagtggggttggtg
atcgcggcaagggttatggtcacaaaacgtggtaatcgcattggtatttgtacgctagat
gaccgctctggtcgtctggaggtgatgttattcaccgatgcattggaaaaatatcagcat
ttattggaaaaagaccgtatcctgatagccaccggacaggtcagctttgatgactttagt
ggtgggcttaaaatgaccgcccgtgagttaatggacatcagtgaagctcgtgaaaaatat
gcccgtgggcttgctatctcgctgactgacaggcaaattgatgaccagcttttgaaccgt
ctccgtcagtcgttggaaccccatcgagcggggacgatcccagtacatctttattaccaa
cgggaagatgctcgcgcccggctgcggtttggagccacatggcgcgtgacgcccaccgat
cgcttattaatcgatttgcgaacgttggtaggtaatgagcaagtggaactggaatttgac
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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