KEGG   Yersinia pestis PBM19: CH59_3902
Entry
CH59_3902         CDS       T03716                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
ypw  Yersinia pestis PBM19
Brite
KEGG Orthology (KO) [BR:ypw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ypw03032]
    CH59_3902 (topA)
   03400 DNA repair and recombination proteins [BR:ypw03400]
    CH59_3902 (topA)
Enzymes [BR:ypw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     CH59_3902 (topA)
DNA replication proteins [BR:ypw03032]
 Prokaryotic type
  DNA Topoisomerases
   CH59_3902 (topA)
DNA repair and recombination proteins [BR:ypw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CH59_3902 (topA)
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Zn_ribbon_recom Toprim_4 Toprim_2
Other DBs
NCBI-ProteinID: AJI90229
UniProt: A0A3G5L4G6
Position
complement(4295050..4297665)
AA seq 871 aa
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSANSAEEKAKKDDK
PKKKVKKDEKVALVNRMGVDPYHGWKAQYEILSGKEKVVAELKALAENADHIYLATDLDR
EGEAIAWHLREVIGGDDKRFSRVVFNEITKNAIQQAFNQPGELNISRVNAQQARRFMDRV
VGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREKEIKAFVPEEYWELHADLVAKGDIPI
QMEVTHAHGKPFKPVNREQTHAALTLLENARYKVLDREDKPTSSKPSAPFITSTLQQAAS
TRLSFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALTMVRGYIGDNFGDKYLPATPNQ
YSSKENSQEAHEAIRPSDVNVLAEQLKDMEADAQRLYQLIWRQFVACQMPPAKYDSTTLT
VQAGDFQLRAKGRTLRFDGWTKVMPALRKGDEDRTLPVIEVGSDLDLQKLIPSQHFTKPP
ARYSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENF
RELMNYDFTARMESGLDQVANDQAEWKAVLDGFFAEFSEQLEKAEKDPEEGGMRPNQMVM
TSIDCPTCGRQMGIRTASTGVFLGCSGYALPPKERCKTTINLVPDAEILNILEGDDAETN
ALRARRRCQKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEAGEFRIKGYEGPIVECEKC
GSEMHLKMGRFGKYMGCTNDECKNTRKILRSGEVAPPKEDPVPLLELPCEKSDAYFVLRD
GAAGVFLAANTFPKSRETRAPLVEELVRFKDRLPEKLRYLADAPVVDKEGNKTLVRFSRK
TKQQYVSSEKDGKATGWSAFYIDGKWVEAKK
NT seq 2616 nt   +upstreamnt  +downstreamnt
atgggtaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataaatac
ttagggaatgattacgtggttaagtccagcgtcggtcacattcgtgatttgccgaccagt
ggctcagccagtaaaaagagcgctaactcagctgaagaaaaagccaaaaaagacgataaa
cccaaaaagaaagtgaagaaagacgaaaaggttgccttagtcaaccgtatgggggtcgat
ccttatcatggctggaaagcgcagtatgaaattttgtctggcaaagagaaagtggttgcc
gagctgaaagcattagcagaaaacgcggatcatatctatctcgcaaccgaccttgatcgc
gaaggtgaggctattgcctggcatttgcgggaagtgatcggtggggacgataaacgtttt
agccgcgttgtctttaacgaaatcaccaagaatgcgattcagcaggcgtttaatcagcct
ggtgaactgaacatcagccgtgtaaatgcacaacaagcccggcgttttatggatcgggtt
gttggctatatggtctctccactgttgtggaagaaaattgcccgtggcctgtcagctggc
cgtgtacagtcagttgctgtgcgccttgtggttgaacgtgaaaaagagattaaagcattc
gttcctgaagaatattgggagctacatgcagatttagtggctaaaggtgacattccgatt
caaatggaagtcactcatgcccatggcaagccatttaaaccggtaaatcgtgagcaaaca
catgcagcgctgacgttactggaaaatgcccgttataaggtgttggatcgtgaagataaa
ccgaccagcagtaagcccagcgcacccttcattacctccaccttacagcaggcggcaagt
acccgtctgagttttggtgtgaaaaaaaccatgatgatggcacagcgcctgtatgaagcg
ggtcatatcacctacatgcgtaccgactcgactaatttgagtcaggatgcattgacgatg
gtacgtggttatatcggcgataattttggtgataagtatctgcctgcaacgcctaaccaa
tacagcagcaaagagaattcgcaggaagcgcatgaggccatccgcccttcagatgtcaat
gtgttagctgagcagttgaaagatatggaagcggatgcccagaggttgtaccaattgatt
tggcgtcagtttgtggcgtgccagatgcctccggccaagtatgactcgaccacactgaca
gtgcaggcgggggatttccaactgcgcgccaaaggccgcacattgcgctttgatggttgg
accaaggttatgcctgcgctgcgtaaaggtgatgaagatcgcaccttgccggtgattgaa
gtgggcagtgatttagacttacaaaaactgattccgagccagcattttaccaagccaccg
gctcgttatagtgaagcatcattagtgaaagagctggaaaaacggggtattggccgtcca
tcgacttatgcctctattatttcgaccattcaagatcgtggctatgtgcgggtagaaaac
cgtcgcttctacgcagagaaaatgggtgaaattgtgacagaccgcttggaagaaaacttc
cgcgagctgatgaattacgatttcacggcacgaatggaaagcggtttggatcaagtcgcc
aatgatcaggccgaatggaaagcggtgctggatggcttctttgctgaattcagcgagcag
cttgaaaaggcagaaaaagatcctgaagaaggaggaatgcgcccgaatcagatggtgatg
accagcattgattgcccaacctgtggccgtcagatggggatccgtactgcgagtactggg
gtgttccttggctgttccggttatgcattgccgcctaaagagcgctgtaaaaccaccatt
aacttggtgccggacgctgagattttgaatattctggagggtgatgatgcggagactaac
gcattacgtgcccgccgccgttgccagaaatgtggtactgcgatggatagctaccttatc
gataatcaacgcaagttacatgtttgcgggaataacccagcgtgtgatggctatgaaatc
gaagcaggtgagttccggataaaaggctatgaaggcccaattgttgagtgcgagaaatgt
ggttctgaaatgcacctgaaaatggggcgcttcggtaagtacatgggctgcaccaatgac
gagtgtaagaatacccgcaagattctgcgtagcggtgaagttgcaccaccgaaagaagat
ccggtaccattgttagagttgccttgcgagaaatcagatgcttatttcgtcctacgagat
ggcgcagctggcgtgttcttggcagccaatacattccctaaatcgcgtgaaacccgtgca
ccgctggtagaagaattggttcgctttaaagaccgtttgcctgagaagttgcgttatctg
gctgatgcccctgtggttgataaagagggtaataaaaccctggtccgtttcagccgtaaa
acgaagcaacagtatgtttcatcagagaaagatggcaaagcaacaggctggtctgctttc
tatattgatggtaaatgggttgaggcaaagaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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