KEGG   Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_01555
Entry
UGYR_01555        CDS       T03887                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
yrb  Yersinia ruckeri Big Creek 74 (serotype O2)
Brite
KEGG Orthology (KO) [BR:yrb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yrb03032]
    UGYR_01555
   03400 DNA repair and recombination proteins [BR:yrb03400]
    UGYR_01555
Enzymes [BR:yrb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     UGYR_01555
DNA replication proteins [BR:yrb03032]
 Prokaryotic type
  DNA Topoisomerases
   UGYR_01555
DNA repair and recombination proteins [BR:yrb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      UGYR_01555
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Toprim_4
Other DBs
NCBI-ProteinID: AKA37202
UniProt: A0A380QLA8
Position
354611..357226
AA seq 871 aa
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSANSTEDKTKKEDK
PKKKVKKDEKVALVNRMGVDPYHGWKAQYEILPGKEKVVAELKALAENADHIYLATDLDR
EGEAIAWHLREVIGGDDKRFSRVVFNEITKNAIQQAFNQPGELNINRVNAQQARRFMDRV
VGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREKDIKAFVPEEYWQLHADLLAKGEIPI
QMEVTHAHNKPFKPVNREQTHAALTLLENARYQVLDREDKPTSSKPGAPFITSTLQQAAS
TRLSFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALTMVRGYIGDNFGDKYLPPSANQ
YSSKENSQEAHEAIRPSDVNVLAEQLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLT
VQAGDYQLRAKGRTLRFDGWTKVMPALRKGDEDRTLPVIEVGSELDLQKLIPSQHFTKPP
ARYSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENF
RELMNYDFTARMESGLDQVANDQAEWKTVLDEFFAEFSEQLETAEKDPEEGGMRPNQMVM
TSIDCPTCSRQMGIRTASTGVFLGCSGYALPPKERCKTTINLVPETEILNILEGDDAETN
ALRARRRCQKCGTAMDSYLIDTQRKLHVCGNNPACEGYEIETGEFRIKGYEGPIVECEKC
GSEMHLKLGRFGKYMGCTNDECKNTRKILRSGEVAPPKEDPVPLPELACEKSDAYFVLRD
GAAGVFLAANTFPKSRETRAPLVEELVRFKDRLPEKLCYLADAPVADPEGNKTLVRFSRK
TKQQYVSSEKEGKATGWTAFYIDGKWVETKK
NT seq 2616 nt   +upstreamnt  +downstreamnt
atgggcaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataagtat
ttagggaatgactacgtggttaagtccagtgtcggtcacattcgtgatttgccgaccagt
ggttcagccagcaagaagagcgctaactcaaccgaagataaaaccaagaaagaagacaaa
cccaaaaagaaagttaaaaaggacgaaaaagttgcgctggtaaaccgaatgggcgtcgat
ccctatcacggttggaaagctcaatatgaaattctgcccggcaaagagaaagtggttgct
gagcttaaagccctggccgagaatgctgaccacatctatctcgcaaccgaccttgaccgc
gaaggagaggctattgcctggcatttgcgggaagtcattggtggcgacgacaagcgtttt
agccgagtcgtatttaacgaaattactaaaaacgccattcagcaagcttttaaccaaccg
ggtgaattaaatatcaaccgagttaacgcgcaacaggcccgtcgttttatggatcgggtt
gtgggttatatggtttccccgctgttatggaaaaaaattgcgcgcggtttatctgccggg
cgagtgcaatctgttgctgtgcgtttggtggttgagcgggaaaaagacattaaggcgttt
gttcctgaagaatactggcaattgcatgctgacctgctggcaaaaggtgaaattcctatt
cagatggaagtcacccatgcccacaataaaccgttcaaaccggttaatcgtgagcagacc
cacgctgcactgacgttgttggaaaacgcacgttaccaagtgctggatcgtgaagataaa
ccgaccagtagcaaaccgggtgcacctttcatcacctcaaccttgcaacaggctgccagt
acccgcctgagtttcggcgtgaaaaaaaccatgatgatggcacagcgcctgtatgaagcg
gggcatatcacttatatgcgtaccgattccaccaatttaagtcaggatgcactgactatg
gtgcgtggttatattggtgataattttggcgataaatatttgccgccttcagccaatcag
tacagcagcaaagagaattcgcaagaagcgcatgaagccatccgtccatcggatgtcaat
gtgctggccgaacagttaaaagacatggaagcggatgcgcagaaactgtatcagttgatc
tggcgtcaattcgttgcctgtcaaatgacaccggcaaaatacgactccaccacactgacg
gtacaagctggcgattatcaattacgcgctaaaggccgtacattgcgttttgacggctgg
accaaagtgatgcctgcgctgcgtaaaggtgatgaagatcgcaccttgccagtgattgaa
gtgggaagtgagctggatctgcaaaaactgatccccagccagcactttaccaagccgcct
gcgcgttatagcgaagcgtcactggttaaagaactggaaaaacgtggtattggccgtccg
tccacctatgcatcgattatttctactattcaggatcgtggttacgtcagagtagaaaac
cggcgtttctatgcggaaaaaatgggtgagatcgtcactgaccgtctggaagaaaacttc
cgtgagttgatgaattacgatttcaccgcccgcatggaaagtggtttggatcaggttgcc
aacgatcaggcagaatggaaaaccgtgctggatgagttctttgctgagttcagcgaacaa
cttgaaaccgccgaaaaagatcctgaagaaggcggtatgcgcccgaaccagatggtgatg
accagcattgattgcccaacctgtagtcgccaaatggggatccgtaccgcaagcaccgga
gtcttccttgggtgctctggttatgcattgccaccgaaagaacgttgtaaaaccaccatc
aacctggtgccggaaacggaaattctcaacattctggaaggggatgatgcggaaaccaac
gcgctgcgtgcccgtcgtcgttgccagaagtgtggcactgcaatggacagttacctgatc
gatacgcaacgtaaattgcatgtttgtggtaataaccccgcctgtgaaggttacgagatc
gaaaccggtgagttccgtatcaagggttacgaaggcccgatcgttgaatgtgaaaaatgt
ggttctgaaatgcacctgaaattggggcgcttcggtaaatacatgggatgcaccaacgac
gaatgtaaaaacacgcgcaaaattttacgcagtggtgaagtggctccgccgaaagaagat
ccggttcctttgcctgaattagcatgcgaaaaatctgatgcctactttgtattacgtgat
ggtgcggctggcgtattccttgctgcgaacactttccctaaatcccgtgaaacccgtgcg
ccgttagtggaagagttggttcgtttcaaagatcgtctaccagagaaattgtgttatctg
gctgatgcgccagtagccgatccggaaggtaataaaaccttggttcgctttagccgtaaa
acgaaacagcaatatgtttcgtcagagaaagagggcaaagcaacaggttggactgctttc
tatatcgacggtaagtgggttgaaaccaaaaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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