KEGG   Ziziphus jujuba (Chinese jujube): 107406978
Entry
107406978         CDS       T04794                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03020  RNA polymerase
zju03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107406978
  09124 Replication and repair
   03420 Nucleotide excision repair
    107406978
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107406978
   03400 DNA repair and recombination proteins [BR:zju03400]
    107406978
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     107406978
  RNA polymerase III system
   RNA polymerase III
     107406978
  RNA polymerase I system
   RNA polymerase I
     107406978
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107406978
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DUF2405
Other DBs
NCBI-GeneID: 107406978
NCBI-ProteinID: XP_015869680
UniProt: A0A6P3Z6B7
Position
11:join(5408678..5408932,5409231..5409407,5409731..5409844,5410495..5410620)
AA seq 223 aa
MEREGLGEAVVGRCMSSYVDQGSTESHRYYLSRRTAMEMLRDRGFSVPASDLALTLPEFR
VIHGPIVDYDRLRFSVTHRSDPSKRIMVIFRGHGVVKVNDVRSIASQIVNKDSLTGLILI
LQNQMTNPAQKALDLLPFKVEIFQITDLLVNITKHVLKPKHRILTDEEKQKLLKKHSIQE
TQLPRMSRKDAIARYYGLERGQVVKVTYSSEITKSHITYRCVW
NT seq 672 nt   +upstreamnt  +downstreamnt
atggagagggaagggttaggggaggcagtagtagggaggtgcatgagtagctacgtggac
caaggtagcacggagagtcacagatactacctgtcgcgcagaactgcgatggagatgctg
agggaccgaggattttctgttcccgcctccgacctcgctctcaccctccctgaatttcga
gtcattcacggccccattgtcgattacgaccgcctccgcttctccgttactcatcgctct
gacccttccaaaaggatcatggtcattttccgtgggcatggtgtggtgaaagttaacgac
gtccgtagtattgcatctcagattgtcaacaaagacagtttaactgggcttattttgatt
ttgcaaaaccaaatgacaaatccggcacagaaagctttggatcttctcccttttaaagtg
gaaatatttcagattacggacttgcttgtgaatatcacaaagcatgtgttgaagccaaaa
caccgtatactaactgatgaagagaagcagaaacttctaaagaaacacagcattcaagaa
acgcagctgcctcggatgtcgagaaaagatgcaattgcgcgatactatggactggaaagg
gggcaggtggtgaaagttacttacagtagtgaaattacgaaatcccacatcacttatcga
tgcgtctggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (23)   

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