KEGG   Ziziphus jujuba (Chinese jujube): 107414612
Entry
107414612         CDS       T04794                                 
Name
(RefSeq) RNA polymerase sigma factor SigE, chloroplastic/mitochondrial
  KO
K03093  RNA polymerase sigma-I factor
Organism
zju  Ziziphus jujuba (Chinese jujube)
Brite
KEGG Orthology (KO) [BR:zju00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107414612
Transcription machinery [BR:zju03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     107414612
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r4 Sigma70_r2 Sigma70_r4_2 HTH_11 GerE
Other DBs
NCBI-GeneID: 107414612
NCBI-ProteinID: XP_015878246
UniProt: A0A6P3ZIQ1
Position
8:join(27631987..27632688,27632836..27632982,27633569..27633805,27633964..27634227,27634330..27634527)
AA seq 515 aa
MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR
KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVG
GLKTRGRRRKKKISADDEEEKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNACVRK
RKESISENDKIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQVN
ENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQDF
ANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSFGL
ESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVTQE
EFIDGITDVEGVEGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGRGDRTLGEIA
GNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV
NT seq 1548 nt   +upstreamnt  +downstreamnt
atgggagttgtgacagtttcaagctcagccgcccaaactcctttaggattaagcccgaaa
ttcccaacttatcaatctatatcgaagaaacccttgattgtggcatttaaagcagataaa
ttcaatgaaactgccttggttgcaccccatgagcaaatccctttgcctatagaagcacgt
aaggaacaccagaagagactaggaaaagttaacaaaccttcaaagagagtaaacgctgcc
attacagatgaagcttctacttgtaccctggaagtggattacaatgaggctgcggcgaaa
cttgaaaacatatataaacttagccccatgacagatgcttctgatgtggaagatgtaggt
ggcttgaaaactagaggccggaggaggaagaagaaaatcagtgcagatgacgaggaagaa
aagagaactagtggaagttttgttaggagccgcagaaagaaggcgaaaagattgaatctt
gataaaagggttgaattgaaaaagaacaaggtggatgaagtaaatgcatgtgttagaaag
agaaaagaaagcattagtgaaaatgataagattgagaatcttgtgagggaatattctgct
tcaactgatttggtcagcttggactggaagaaaatgaagatacctccagttcttccttct
acagagcacgcatggttgttcaagttgatgcaacctttgaaggcactactacaagtaaat
gaaaatttaaaacaatctttggggagaaaaccgaccgagggtgaattggctgaggcaaca
aatatgagcattgcacaagtaaaaagacacttggaggttggtcgagctgcgagaaacaag
ctcattaagcacaaccttcgacttgtattattcgtaatcaacaaatattttcaagacttt
gcaaatggtccaagatttcaagacctttgtcaggcgggagtgaagggacttattacagca
attgatcgatttgaaccaaagaggagattccgactttccacatatggtcttttctggatt
aggcatgccattattcgttccatgacactctcaagctttcaacgtgtttcgtttggcctt
gaatctgttagagcagaaatccaaaaggccaagcttgagttgatgtttgagctaaaaagg
ttacctacagaggaagaaataattgaaaaggttggaatctcccctgagaggtacaatgaa
gtaatgagagcatcaaaagccgttttctctcttcattcaaggcatgcagttacacaagaa
gaatttattgacggtatcactgatgttgagggtgtcgaaggtgataacaggcgccaacct
gctcttctcaggcttgctcttgatgatgtgctcgattctttgaagcccaaggagagcttg
gtgatcagacagagatatggacttgatggtagaggcgatagaacattgggggagattgct
ggaaacctaaatatttccagagaaatggttaggaaacatgaagttaaagctcttatgaag
ctcaagcatccagctcgagtggattatctccgccgctatattgtctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (25)   

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