KEGG   Ziziphus jujuba (Chinese jujube): 107417688
Entry
107417688         CDS       T04794                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03022  Basal transcription factors
zju03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107417688
  09124 Replication and repair
   03420 Nucleotide excision repair
    107417688
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107417688
   03400 DNA repair and recombination proteins [BR:zju03400]
    107417688
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     107417688
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     107417688
SSDB
Motif
Pfam: BSD PH_TFIIH Plant_vir_prot
Other DBs
NCBI-GeneID: 107417688
NCBI-ProteinID: XP_015881811
UniProt: A0A6P3ZQI1
Position
1:join(11560484..11560564,11560704..11560782,11560924..11560985,11561209..11561272,11561675..11561837,11562511..11562586,11562704..11562799,11563061..11563105,11563943..11563999,11564179..11564334,11564470..11564535,11564875..11564998,11565201..11565257,11565362..11565471,11565556..11565747,11565882..11565995,11566246..11566323,11566704..11566751,11566833..11566901,11567632..11567718)
AA seq 607 aa
MSSREVIKRAKYKISVKDPGTPGVLKMNENKLLFRPSDPTSATKLDVEFRHIKGHKHTKE
GSNKPPWLNLPHDQGGSYIFEFESFSDLHICREFVGNALAKSGEAAKAASVAKVSPATKV
ASEGSAVTHLDEQLSTTEMELRMKLLRENSELQKLHKQFVIGGVLTESEFWATRKKLLDG
DNYRKLKQRVGFKNSMILDTKPMTDGRTNKVTFSLTPEIKYQIFVLKPAVHQAFLNFVPS
KMTEKDFWSKYFRAEYLHSTKNAVAAAAEAAEDEELAMFLKDDDILAREARQKIRRVDPT
LDMEADQGDDYTHLPDHGIFRDGSKDISESQQEHYKRTLSQDLNRQGAVVLEGRAVDVDL
EDPRIVAQALVRSRPETNENASQERLERISRMTEIEDLQAPHDHPFAPLCIKDPREYFDA
QQANALRSLDDTRAGTEQMKCNLTNEEVYGSLRKSISEIKTRGLNDPIVKPEVALMVFNG
LTQNISSNKYQLGKNPQESILDRLPNTTKEELLHHWMSIQELLRHFWSSYPITTTYLNTK
VTRLKDAMSQIYRQLEDIKASMQSDFRHQVSLLVRPMHQALDAAFQHYDADLQKRSARTG
ETPNGYS
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgtcgagtagggaggtgatcaagcgagctaaatacaagatctcagtgaaggaccctgga
actcctggtgttctcaaaatgaatgaaaataagcttttattcaggccaagtgatcccacg
tctgctacaaagctagatgttgaatttagacatattaaaggtcacaagcacacaaaggag
ggctcaaataaaccaccttggcttaatctcccccatgatcaggggggaagttacatattt
gagtttgaaagcttttctgatcttcatatatgccgagaatttgtaggcaatgcccttgca
aaatctggggaggctgcaaaagctgcttctgtggcaaaagtttctcctgctacaaaagtt
gcttctgagggatctgccgttacgcatcttgatgagcaactcagtaccacagaaatggag
ctcaggatgaagctcttgcgagagaatagtgagttgcagaaacttcataagcaatttgtg
attggtggcgtgttgacagaatcagagttctgggcaacaaggaagaaattgcttgatgga
gataactacagaaagttaaaacagcgggttggtttcaaaaattcaatgatattggatacc
aaaccaatgactgatggtcggacaaacaaggtcacatttagtttgacaccagagatcaaa
tatcagatttttgttctgaaaccggctgttcatcaggctttccttaattttgttcccagt
aagatgacagagaaagacttctggagtaaatattttagagctgaataccttcacagtaca
aagaatgctgttgcagctgcagcagaggcagctgaagatgaggaactggccatgtttctt
aaggatgatgatatattggcgagagaagctcgccagaagatcagacgtgttgatccaact
ttagacatggaagctgaccaaggagatgactatacccatctaccagatcatggcatcttt
cgtgatggtagcaaggatataagtgaatcacagcaggagcattacaagaggactttgtca
caagaccttaaccgacaaggtgctgttgttctcgaaggaagagctgtagatgtggacttg
gaagatccaagaattgttgcacaggcacttgtgcggtcaagacccgaaactaatgaaaat
gcaagccaggagaggcttgagaggatttctaggatgactgagatagaggacctccaggca
cctcatgatcatccttttgctccactgtgtatcaaggacccccgagaatactttgatgca
caacaagctaatgcgctaagatctttggatgacactagagctggaacagaacaaatgaaa
tgcaacctgactaatgaagaagtgtatggctccttgaggaagtccatatctgaaataaag
actaggggattaaatgatcccatagttaagcccgaagtagctcttatggttttcaatggg
ttgacacagaatatctcaagtaacaagtatcaacttggaaagaatcctcaggaaagtatt
cttgacaggttgccaaacacaactaaagaggagcttctacatcattggatgtccattcaa
gaactactgcgacatttctggtcttcatatccaattacaacaacatatcttaataccaag
gtaactagactgaaggatgcgatgtcacaaatttaccgacagctagaggatataaaagcg
tcaatgcagtcagatttccggcaccaggtttccctccttgttcgaccaatgcatcaggca
ttggatgctgcttttcaacattatgatgcagatttacagaaaagatcagcaaggaccggg
gagacaccaaatggatattcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (23)   

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