KEGG   Ziziphus jujuba (Chinese jujube): 107426444
Entry
107426444         CDS       T04794                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03022  Basal transcription factors
zju03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107426444
  09124 Replication and repair
   03420 Nucleotide excision repair
    107426444
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107426444
   03400 DNA repair and recombination proteins [BR:zju03400]
    107426444
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     107426444
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     107426444
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     107426444
SSDB
Motif
Pfam: DEAD_2 HBB Helicase_C_2 ResIII DEAD SNF2-rel_dom AAA_11
Other DBs
NCBI-GeneID: 107426444
NCBI-ProteinID: XP_015892121
UniProt: A0A6P4A8B6
Position
9:complement(join(2923698..2923817,2924154..2924262,2924596..2924672,2924787..2924865,2925015..2925104,2925313..2925437,2925553..2925733,2925934..2926127,2926620..2927023,2927105..2927187,2927528..2927808,2927909..2928442))
AA seq 758 aa
MKFQIEDVTVYFPYDHIYPEQYAYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT
LSKPNSPLKLIYCTRTVHEMEKTLAELKLLHEYQLQHLGPQARILALGLSSRKNLCVNPL
VLAAENRDSVDAACRKLTASWVRAMAAENPEVPTCEFFEQYERAGSGAVLPPGVYTLQDL
RAFGIEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTLEGARRNLNKMRQEIDRFKATDAGRLRAEYNRLVESLAQRGNLPI
GDAWLANPALPDDILREAVPGNIRKAEHFLHVLRRLVQYLEGRLETENVEKESPVGFVAS
IITHAGIDQKALKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSVVPDGVVCFFV
SYSYMDGIVNSWNETGILKDIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKAGGNGRRTLLSQEDLEKLGDRIIDEMLH
NT seq 2277 nt   +upstreamnt  +downstreamnt
atgaagttccaaattgaggatgtgacggtgtatttcccgtacgatcacatatatccggag
cagtatgcgtacatggtggagctgaagagagccctggacgccaaaggccattgcctcctg
gaaatgcccaccggcactggtaagaccattgcccttctctcccttatcaccagctacact
ctctccaaacccaacagccctctcaagctcatctattgcacccgaaccgtccacgagatg
gagaagaccctcgctgagctcaagctcctccatgagtatcagctccagcatctgggtccc
caagcccggatcctagctctcggcctatcctcccgcaagaatctatgcgtcaatccgctt
gtactcgctgctgagaatcgcgattctgttgacgctgcctgtaggaagttgacggctagc
tgggtacgggccatggctgccgagaatcctgaagttcccacctgtgagttctttgaacag
tacgagagggccggctccggcgccgtcttgccacctggggtttatacattgcaggatttg
agagcatttgggattgagaaaggatggtgtccatacttcttggctcgccatatggtgcag
tttgcaaatgtggtggtgtatagttaccagtatctgctcgatcctaaagtggccgggatt
atttccaaggaaatgcagaaggagtctgttgtggtgtttgacgaggctcacaacattgac
aatgtgtgtattgaagcacttagcgttagtgtcaggaggcagacacttgaaggggccagg
aggaatctcaataagatgcgtcaggagattgacaggttcaaggccactgatgctggtaga
ttgcgtgcagaatacaaccggctggttgagagcttggcacaaagaggaaaccttcctatt
ggagacgcttggcttgcaaatcctgctctgcctgatgatattctgagggaggctgtgcct
ggaaatattcgcaaagctgagcattttttgcatgttttgcgtagacttgtccaatatttg
gaagggcgtctagagacagagaatgttgagaaagaaagccctgttggttttgttgcctct
attattacacatgctggaattgaccaaaaagccctaaagttttgttatgatcgcctacac
tcactcatgttgacactggagattacggatacagatgaattcttacacattcaaacaata
tgcgattttgcaacgcttgtggggacatatgctcgtggtttttctattataattgaaccc
tttgatgagagaatgccccatattcctgaccctgttctgcagcttagttgtcatgatgct
tctcttgcaataaagcctgtatttgagcgatttcagtcggtagtgattacatctggaact
cttagcccgattgatctctacccccgtcttctcaatttcaatccagttgtcagtcgaagt
tttacaatgtccttgacaagagattgcatatgtcctatggttctcactcgtggaagtgat
caacttccagtgagtaccaaatttgatatgcgaagcgaccttggtgtggtaaggaattat
ggaagactcttgctggagatggtatctgttgttccagatggggttgtttgtttttttgtt
agctactcttatatggatggaatagtcaatagttggaatgaaacaggaattctaaaggat
ataatgcagcataagcttgtcttcattgagacccaagatgtggtggaaactactttggct
cttgacaactatcgcaaagcttgtgattgtggtagaggtgctgtcttcttttctgttgcc
agaggaaaagtagctgaaggaatagactttgatcggcattatggacgacttgtaatcatg
ttcggggttcctttccagtacacactgagcaaaattttgcttgctcggttggaatactta
cgggataccttccagataaaagaaggggattttttaacttttgatgctttgagacaagct
gcgcaatgtgttggtcgagtaatccggtcaaaggctgactatggtatgatgatttttgct
gacaaaaggtatagccgtcatgacaaacgctctaaattgcctggatggatactgtcacat
ttacgagatgcacacctgaatttgagtacagacatggcactacatattgcacgggagttt
ctaagaaaaatggctcaaccatatgacaaggcaggtggcaatggtcggagaacgctgtta
tcccaggaggacttagagaaattgggtgatcgaatcattgatgaaatgttgcattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (28)   

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