KEGG   Ziziphus jujuba (Chinese jujube): 107433687
Entry
107433687         CDS       T04794                                 
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03420  Nucleotide excision repair
zju04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107433687
  09124 Replication and repair
   03420 Nucleotide excision repair
    107433687
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:zju04121]
    107433687
   03400 DNA repair and recombination proteins [BR:zju03400]
    107433687
Ubiquitin system [BR:zju04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     107433687
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      107433687
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40
Other DBs
NCBI-GeneID: 107433687
NCBI-ProteinID: XP_015900489
UniProt: A0A6P4BMU5
Position
5:complement(join(3703586..3703624,3703723..3703794,3704095..3704184,3704280..3704434,3705123..3705366,3705628..3705806,3706252..3706411,3706511..3706771,3706902..3707051))
AA seq 449 aa
MWREIGDRETGKIRPNLFANRIKWNRTERLQLSNHKDIVSPHKGSINSLQVDLTEGRYLL
SGASDASAAIFDIQRATEYEGGGVIAKHKCIFSVDKQHEGGHRYSISSAIWYPIDTGLFI
TGSYDHHINVWDTNTTQVVVNFKMPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDIASG
AFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSLSQLGRRP
PILERSATTKVSTTKSLLTSPSSLTKARASQKKLANGSGMKQSSICKFPAKGPMRQRLHP
GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDVASGCNTLVNFETVRLQSS
KPIQLATTQSSDLIFVPCMTTVKAFDVWSGKTSLTFRGHYECVNCCWFNFQDQELYTGGN
DRQILVWSPSQLIFDEVDGPAHDQDNWSD
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgtggagggagatcggagacagagaaacgggcaaaattcgcccaaatttgttcgcgaat
cgtattaagtggaatcgaaccgagaggctccaattgtccaatcacaaagacattgtttca
cctcacaaaggctccataaattcacttcaggttgatttgacagagggtaggtatttgtta
tcgggagcgtcggatgcatcggcagcaatttttgatattcagcgtgcaacggagtacgaa
ggaggtggtgtaattgcgaagcacaagtgcattttctcagttgacaaacagcatgagggt
ggtcatagatattccatatcttccgccatttggtatcctattgacacgggactatttatc
accggttcatatgaccatcacattaacgtttgggatacaaataccacgcaggtagtggtg
aacttcaaaatgccaggaaaggtttataggactgccatgtcgtctttagcaacatctcac
atgctaattgcagctggaactgaagatgttcaagttcgcctgtgtgatattgcttctggg
gcatttgctcacacactctctggtcaccgtgatggtgtaatgactgtagaatggtctact
tcaagtgagtgggttttggttacagggggatgtgatggtgcaataagattttgggacatc
agacgtgctggatgttttcttgttttagatcagtccctatctcagcttgggaggcgccca
cctatcctggaacggtctgccactactaaggtttctacaacaaagtccttgttaacaagc
ccaagttcattgacaaaagcacgagcatcacaaaagaagcttgctaatggaagtggtatg
aaacagtcatctatttgtaaatttccagcaaagggacctatgaggcagagattacatcca
gggatgttgtctagtcaggatcgcgccactgcccattatggtgcagtcactgggttaaaa
gttactgaagacggcatgtatcttctgagtgcaggttctgattcaagattgaggctgtgg
gatgttgcatctggttgcaatactctggtgaactttgaaactgtgcgcctgcagagcagc
aagccaatacagttagctacaactcagagttcagacctcatttttgttccatgcatgacc
actgtgaaggcatttgatgtgtggtcaggtaagacatccctgacatttcgtggccactat
gaatgtgtgaactgctgctggtttaatttccaggatcaggaattatacactggtgggaat
gatagacaaattctcgtttggtcaccatcgcaattgatttttgatgaagtggatggacct
gcacatgatcaggacaattggagcgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (26)   

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