KEGG   Ziziphus jujuba (Chinese jujube): 107433723
Entry
107433723         CDS       T04794                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X4
  KO
K03129  transcription initiation factor TFIID subunit 4
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107433723
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107433723
   03036 Chromosome and associated proteins [BR:zju03036]
    107433723
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     107433723
   Coactivators
    SAGA/TFTC/STAGA complex
     107433723
Chromosome and associated proteins [BR:zju03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     107433723
SSDB
Motif
Pfam: TAF4 RST DUF4513
Other DBs
NCBI-GeneID: 107433723
NCBI-ProteinID: XP_015885051
UniProt: A0A6P3ZY00
Position
5:complement(join(3546015..3546178,3547757..3548027,3548112..3548177,3548323..3548463,3548546..3548602,3548680..3548735,3548872..3549007,3549096..3549183,3549323..3549447,3549612..3550625,3550706..3550804,3550924..3551423,3551615..3551720,3551950..3551991))
AA seq 954 aa
MDPSIMKKLLEDDEDESMHSGADVEAFQAALNRDIGGDASASQPSDSDSGSNNASSHSLP
PPLQMASRDANTDSPIQKDQKSTQQQDNFSDKDLKQQHGSITDNLQQHNSAPQESNHFPF
PPKQSQGDRQQGQIERNPIQIPQTAGTQITGKTPDSESQYLKLQKMSNQQATVSEQPSNP
TNRGKQVPFGMLLPVLLPQLDKDKGMQLQILFGKLKSNEISKDAFVRLIRGVVGDQVLKL
AVLKVQSQQKLQASSKQYSSASQTSVRQQSPGMPAVSGGATQFSDPRSFAHLHQKGANSP
AEVSQNPSAAVQVQTDSSHQVLENNVQISREADRQSDSHGIQVNQMPSSSMVAANQERER
SSAPMQGLNKQQQQHLHYPQTSFSMYGGTAGSYHPFSGTNVNTSTLSIKPQPPHDSQIRQ
IPQHQNMSSAQVGGEAQGVNIMSVPKLERQNSLSDPSRMHSGSLSHFASNPTLQQNPASW
QSSSNKEQTAGSLSSMAYVKHEPIDQATDQQQKPLLANPQGLLSVSATQVEQGNASPGTS
KDESLEKQPSRMGFSTSTNVVTSSSGGMVPPNSVSSSMTMQLDSNVPVGPRVPSGTNPAG
INNRTPPKKPSVGQKKPLEALGSSPPPPSKKQKVSGTLLDQSIEQLNDVTAVSGVNLREE
EEQLFSGPKEDSRVSEASRKVVQEEEERLILQRTPLQKKLAEIMAKCGLKSISNDVERCL
SLCVEERMRGLINNLIRLSKQRVDVEKTRHRTITTSDTRLQITTMNRKAREEWEKKQAEA
EKLRKLNEPEGNNAVDGEKEKDDGRSKSFKGQANKEEDDKMRTTAANVAARAAVGGDDML
SKWQLMAEQARQKREGGTDAASGSQPNKDVNRKPISTSGKTTKDNQETEKSSSTAPFSAP
GAVRKFGRNQVIVPHTRVARSISIKDVIAVLEREPQMSKSTLVYRLYEKIATGE
NT seq 2865 nt   +upstreamnt  +downstreamnt
atggatccttcgatcatgaagaagctcctcgaagacgacgaggacgaaagcatgcattcg
ggggcggacgtggaagccttccaagcggccttaaatagagatatcggaggagatgcatcg
gcttctcagccatctgattcagactccgggagcaataatgcttctagccattcattacca
ccgccgttgcaaatggctagcagagatgcaaataccgactctccaattcaaaaagaccag
aaaagtacacagcagcaagataatttctctgacaaggacctaaagcaacaacatggatct
attactgataatcttcagcaacacaatagtgccccccaggagtccaatcactttcccttt
ccgccgaaacaatcccaaggcgatcgtcaacaagggcaaatagaacgaaatcctatccag
attcctcaaacagcaggtacgcagattactggaaaaactccagacagtgaatcgcagtac
ttgaaacttcagaagatgagtaatcaacaggcaactgtctctgagcagccaagcaacccc
actaatcgcggtaaacaggtaccatttgggatgttactacctgtcttattgccccagctt
gataaagacaaaggaatgcaacttcaaattctatttggtaaactgaagagtaatgaaatc
tccaaagatgctttcgttcggctcattagaggtgttgtgggggaccaggttctcaaattg
gcggtattgaaagtgcaatcacagcagaaattgcaggcgagttcaaaacagtactcatca
gcatctcaaacatcagtgcggcaacagtctccaggtatgccagccgttagtggaggagcc
acacaattcagtgatcctcgttcatttgcacaccttcatcagaagggtgccaattctcca
gcagaggtctcacagaatccctctgcagcagttcaagtgcagactgattcaagtcatcaa
gtcctagaaaacaatgttcagatatcacgagaggcagatcgccagtctgattcccatgga
atacaagtaaatcaaatgccttcttccagtatggtagctgccaatcaggagagggaacgc
tcttcggctcctatgcagggccttaacaaacaacagcaacaacatttgcactatccacag
acttccttttccatgtatggaggtactgctggcagttaccatcctttttctgggacaaat
gtcaatacttccacattatctatcaaaccacaaccaccgcatgattcacaaataagacaa
atcccacaacatcaaaacatgagttcagctcaggtgggtggagaagcacagggtgtcaac
atcatgagtgtgcccaaattggagaggcaaaattctttaagtgatccgagtagaatgcac
agtggatcactttctcactttgcaagcaatccaactttgcaacagaatcctgcttcttgg
caatcctcatcaaacaaagagcagactgctggttctttgtcatcaatggcttatgtaaaa
catgaaccaattgatcaggctaccgaccagcagcaaaagcccctgttggccaatccacag
ggattgctttctgtttctgccactcaggttgaacagggaaatgcatcaccgggaacttca
aaggatgaatctttagaaaagcagccttcaaggatgggcttttccacttctacaaatgtg
gttacttcatcttctggtggcatggttcccccaaattcagtttcttcttccatgaccatg
caattggattctaatgtgccagtaggacctcgggtaccatctggaaccaatcctgctggg
ataaataacagaacacctccaaagaagccttctgtcggccaaaagaaaccgctcgaagca
cttggttcttcaccaccaccgccaagtaagaagcaaaaagtctctggaacattattggat
caaagcattgaacaacttaatgatgtcactgctgttagtggagttaatcttagggaagag
gaagaacagctattttctgggcctaaggaggacagtcgagtttctgaagcatctcggaaa
gttgtgcaagaagaagaagaaaggttgattttgcaaaggactcccctgcagaaaaaattg
gcagagatcatggccaaatgcggtttgaaaagcataagcaacgatgtagagcggtgtttg
tcactgtgtgtggaggaaaggatgcgtggattaataaacaatctaatcagattgtcaaag
cagcgtgttgatgttgagaaaacaagacaccggactattaccacctctgatacacgatta
caaattacgacaatgaaccggaaagctagggaagaatgggagaaaaaacaggctgaggca
gaaaagctcagaaaactaaatgaacctgaaggtaataatgcagttgatggcgaaaaggag
aaagatgatggtcgttctaaatcatttaaggggcaggcaaacaaagaggaagatgacaaa
atgaggaccaccgctgcaaatgttgctgctcgagctgctgttggaggagatgacatgctg
tcaaaatggcaacttatggctgagcaagcccggcaaaaacgtgaaggagggacagacgca
gcatctggatcccagccaaataaagatgtgaaccgcaagcctatatcaacgtccggaaaa
actacgaaagataatcaagaaactgaaaaaagcagcagcacagctcctttttctgctcct
ggggcagttagaaaatttggaaggaaccaagtgatcgtgccccatacaagggtggcacga
agcatatccattaaggatgtgattgcagtcctggaaagggaaccgcagatgtccaagtct
acccttgtatatcgtttgtatgagaaaattgctacgggtgaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (3)   
   Pfam (3)   
All databases (34)   

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