KEGG   Zea mays (maize): 541972
Entry
541972            CDS       T01088                                 
Name
(RefSeq) histone deacetylase
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
zma  Zea mays (maize)
Brite
KEGG Orthology (KO) [BR:zma00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:zma01009]
    541972
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zma03019]
    541972
   04131 Membrane trafficking [BR:zma04131]
    541972
   03036 Chromosome and associated proteins [BR:zma03036]
    541972
Enzymes [BR:zma01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     541972
Protein phosphatases and associated proteins [BR:zma01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     541972
Messenger RNA biogenesis [BR:zma03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     541972
Membrane trafficking [BR:zma04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    541972
Chromosome and associated proteins [BR:zma03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     541972
SSDB
Motif
Pfam: Hist_deacetyl PheRS_DBD2
Other DBs
NCBI-GeneID: 541972
NCBI-ProteinID: NP_001105095
UniProt: Q8LK09
Position
7:complement(7557924..7570185)
AA seq 618 aa
MRPPSSGKKTEVSHSVGKCGVSDQACHGKCQSCGIDAKPFCAGVNEVSLLTGSHTDVEAS
KENRGACSLNNDRADALEEEANVSTARIGHVESADPGGSVGVEKEIFMAVNEESEGEQAG
ATLEDLFFFNGEEDDDSDWEPASRLVVNRWFCLNCTMPNVDKITYCMNCRELPGSVVDGY
DVFKKQIAQTALLSADTGLLPVSTAIGFDERMLLHSELEVKPNPHPERPDRLRAIAASLA
AAGIFPSKCALVPPREITKEELLMVHSPDHIESVEQTKNMLYSYFTSDTYANGHSACAAK
LAAGLCADLASLIVSGRVRNGFALVRPPGHHAGVKQAMGFCLHNNAAVAALAAKRAGAKK
VLIVDWDVHHGNGTQEIFDGDKTVLYISLHRHEDGNFYPGTGAAHEVGVLDGQGFSVNIP
WSRGGVGDDDYIFAFQTVVLPIASEFAADITIISAGFDAARGDPLGCCDVTPTGYSWMTS
LLAGSSNGRLLVILEGGYNLRSISSSATEVVKVLLGEGPNRASFVVSPSKEALSTVSQVL
KIQQQFWPVLGPTYASLQAQQGSVSSNHSNELKKRKRPGGGPGPFWWKMGSKRLLYEALI
EPRSRPRKLKGSTGSAAP
NT seq 1857 nt   +upstreamnt  +downstreamnt
atgagacctcctagcagtggcaaaaagactgaggtctcccatagcgtggggaaatgtggg
gtttctgatcaagcttgtcatggcaaatgccaaagctgtggcattgatgcaaaacctttt
tgtgctggagtgaacgaagtctccttgttgactggcagtcacactgatgtggaggcctca
aaagagaaccgtggagcatgcagtttgaacaatgatcgtgctgatgctctagaagaagag
gccaatgtttccacagctaggataggtcatgttgagagtgctgaccctggtggctctgtg
ggtgtagaaaaggaaattttcatggctgttaatgaggagtctgagggggagcaagctggg
gcaacactggaggatctgtttttctttaatggtgaagaggatgatgacagtgattgggaa
cctgctagtcgccttgttgtgaatagatggttttgcttgaactgcacaatgccaaatgtg
gacaagattacatattgcatgaattgccgtgagcttccaggatctgttgtagatggatat
gatgtcttcaaaaagcaaattgcacaaacagctttgttatctgctgacacagggttgctg
ccagtgtctacggcgattggttttgatgaaagaatgctgctccacagtgagctagaagtt
aaaccaaatccacatccagaaagaccggatcgccttcgcgccattgctgcaagtcttgct
gctgcagggatctttccctcaaaatgtgctttggtacctcctcgagaaatcacgaaggag
gaacttcttatggttcatagtccagaccacattgaaagtgtcgagcagacaaagaacatg
ctttacagttacttcacttcggatacttacgcaaatggacattcagcatgtgctgccaaa
cttgcagctggattatgtgctgatcttgctagtttgatagtatctgggcgtgttcgcaat
ggctttgcgctggtaagacctcctgggcatcatgcaggggtgaagcaagcaatggggttt
tgtcttcacaacaatgcagcagtagctgcgttagctgcaaaaagagcaggtgccaagaaa
gtcctcatagttgactgggatgtgcaccatggaaatggcacacaagagatattcgacggg
gacaaaacagtcttgtacatatcattacatcgtcatgaggatggaaacttttaccctgga
actggagctgctcatgaggtgggagttcttgatggtcaaggattctcagttaatatacct
tggagccgtggtggtgttggagatgatgactacatctttgcttttcagactgtggtgctt
ccaatagcttcagagtttgccgcagacatcactataatatctgcaggattcgatgcagct
agaggtgaccctctgggttgttgtgacgtcactccaactggatactcttggatgacatcc
ctgctagctggttcctcaaatggaagattgttggtgatacttgagggaggatacaatctc
cggtcgatatcctcatcagctactgaagttgttaaggtcctacttggggagggtcccaat
cgtgcttcatttgtagtttcaccatcaaaagaggccttgagtactgtttctcaagtcctg
aagattcaacaacagttttggccagttttaggtccaacatacgcatcactacaggcgcag
caggggtcggtttcttccaatcatagtaatgagctgaagaaaaggaagcgtccaggagga
ggaccagggcccttctggtggaagatgggaagcaaaaggcttctatacgaagcgcttatt
gagcctcgcagccgtccgaggaaactcaaggggtcaactggttcagcagcgccttag

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (22)   
   RefSeq(nuc) (4)   
   GenBank (9)   
   EMBL (9)   
Protein domain (2)   
   Pfam (2)   
All databases (42)   

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