KEGG   Zea mays (maize): 845227
Entry
845227            CDS       T01088                                 
Symbol
rpoC2, ZemaCp015
Name
(RefSeq) RNA polymerase beta'' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
zma  Zea mays (maize)
Pathway
zma03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:zma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    845227 (rpoC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zma03021]
    845227 (rpoC2)
   03400 DNA repair and recombination proteins [BR:zma03400]
    845227 (rpoC2)
Enzymes [BR:zma01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     845227 (rpoC2)
Transcription machinery [BR:zma03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     845227 (rpoC2)
DNA repair and recombination proteins [BR:zma03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      845227 (rpoC2)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_3 Peptidase_M23
Other DBs
NCBI-GeneID: 845227
NCBI-ProteinID: NP_043017
UniProt: P16025
Position
Pltd:26983..31566
AA seq 1527 aa
MAERANLVFHNKEIDGTAMKRLISRLIDHFGMGYTSHILDQIKTLGFHQATTTSISLGIE
DLLTIPSKGWLVQDAEQQSFLLEKHYYYGAIHAVEKLRQSVEIWYATSEYLKQEMNSNFR
ITDPSNPVYLMSFSGARGNASQVHQLVGMRGLMADPQGQMIHLPIQSNLREGLSLTEYII
SCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIQGISVSPQNGMTEKLFV
QTLIGRVLADDIYIGSRCIASRNQDIGIGLVNRFITAFRAQPFRAQPIYIRTPFTCRSTS
WICQLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLIRSP
SNGKIQFNEDLVHPTRTRHGQPAFLCYIDLHVTIQSQDILHSVNIPLKSLILVQNDQYVE
SEQVIAEIRAGTSTLHFKEKVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHLW
ILSVSMCRSSIASFSLHKDQDQMNTYSFSVDGRYIFDFSMANDQVSHRLLDTFGKKDREI
LDYLTPDRIVFNGHWNCFYPSILQDNSDLLAKKRRNRLVVPLQYHQEQEKERISCLGISM
EIPFMGVLRRNTIFAYFDDPRYRKDKRGSGIVKFRYRTLEEEYRTQEEEYRTREEEYRTR
EEDSEDEYESPENKYRTREGEGEYKILEDEYRTLEDEYETLEDEYGILEDEYRTLEKDSE
EEYGSLENKYRTREGEGEYEILEEESEEEYGSSEDGSEKEYGTLEEDSEEDSEEDSEDEY
GSPEEDSILKKEGFIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKVLDNSIIGV
DTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILGGSLIPPEREKKDSKE
SKKRKNWVYVQRKKFLKSKEKYFVSVRPAVAYEMDEGINLATLFPQDLLQEEDNLQLRLV
NFISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEGARASLVEVKTNDLIRDFLRIELV
KSTILYTRRRYDRTSVGLIPNNRLDRNNTNSFYSKAKIQSLSQHQEVIGTLLNRNKEYPS
LMILLASNCSRIGLFKNSKYPNAVKESNPRIPIRDIFGLLGVIVPSISNFSSSYYLLTHN
QILLKKYLFLDNLKQTLQVLQGLKYSLIDENKRISNFDSNIMLEPFHLNWHFLHHDSWEE
TLAIIHLGQFICENLCLFKLHIKKSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKIL
YKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGVP
WGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVF
LPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALR
GRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKNLYLEIQKKNLFASEMRDILFLHT
ELVSSDSDVTNNFYETSETPFTPIYTI
NT seq 4584 nt   +upstreamnt  +downstreamnt
atggcagaacgggccaacctggtctttcataataaagagatagacggaactgctatgaaa
cggcttattagcagattaatagatcatttcggaatgggatatacatcccatatactggat
caaataaagactctgggcttccatcaagccactactacatcgatttctttaggaatcgag
gatcttttaacaataccctctaaaggatggttagtccaagacgcggaacaacagagtttt
cttttggagaaacactattattatggagctatacacgcggtagaaaaattacgccaatcc
gttgagatatggtatgctacaagtgaatatttgaaacaagaaatgaattcgaattttcga
ataacggatccttctaatccagtctatctaatgtctttttcaggagccagaggaaatgca
tctcaggtacaccaattagtaggtatgagagggttaatggcggatcctcaaggacaaatg
attcatttacctattcaaagcaatttacgcgagggactttctttgacagaatatataatt
tcctgctacggagcccgaaaaggggttgtagatactgctgtacgaacagcggatgctggc
tatcttacacgtagacttgttgaagtagttcaacatattattgtgcgtagaagagattgt
ggtactatccaaggtatttctgtgagtcctcaaaatgggatgacggaaaaactttttgtc
caaacactaattggtcgtgtattagcagacgatatatatattggttcacgatgcattgct
tctcgaaatcaagatattggaattggattagtcaatcgattcataactgcctttcgagca
caaccgtttcgagcacaaccaatatatattagaaccccctttacttgccggagcacatct
tggatctgtcaattatgttatgggcggagtcccactcatggggatctggtcgaattgggg
gaagctgtaggtattattgcgggtcaatcaattggggagccggggactcaattaacatta
agaacttttcatactggtggagtattcacagggggtactgccgaccttatacgatccccc
tcgaatggaaaaatccaattcaatgaggatttggttcaccccacacgtacccgtcatggg
cagcctgcttttctatgctatatagacttgcatgtaactattcagagtcaggatattcta
catagtgtgaatattccgttaaaaagcttgattctagtgcaaaatgatcaatatgtagaa
tctgaacaagtaattgcggagattcgtgccggaacgtccactttgcattttaaagaaaag
gtacaaaagcatatttattccgaatcagacggggaaatgcactggagtactgatgtttac
catgcgcccgaatatcaatatggtaatcttcgtcgattaccaaaaacaagccatttatgg
atattgtcagtaagtatgtgcagatccagtatagcatctttttcgctgcacaaggatcaa
gatcaaatgaatacttattctttttctgttgatggaagatatatctttgacttctcaatg
gctaatgatcaagtaagccatagactgttggatacttttggtaaaaaagatagagaaatt
cttgattatttaacgccagatcgaatcgtgttcaacggtcattggaattgtttctatcct
tccattcttcaagataattcagatttgttggcgaaaaagcgaagaaataggctcgtcgtt
ccattacaatatcatcaagaacaagaaaaagagcgaatatcctgtttgggtatttcaatg
gaaataccctttatgggtgttttacgtagaaatactatttttgcttattttgacgatcca
cgatacagaaaagataaaaggggttcaggaattgttaaatttagatataggaccctggag
gaagaatatcggacccaagaggaagagtataggactcgagaggaagaatatcggactcga
gaggaagactcagaagacgaatatgagagcccagagaacaaatataggacccgagaggga
gagggcgaatataaaatcctagaagacgaatataggactctagaggacgaatatgaaacc
ctagaagatgaatatgggatcctagaggacgaatataggactctagagaaagactcagag
gaagaatatgggagcctagagaacaaatataggactcgagagggagagggcgaatatgaa
atcctagaggaagaatcagaagaagaatatgggagctctgaagatggctcagagaaggaa
tatgggactttagaagaagactcagaagaagactcagaggaagactcagaagacgaatat
gggagcccggaggaagattctatcttaaaaaaagagggttttattgagcatcgaggaaca
aaagaatttagtctaaaataccaaaaagaagtagatcggttttttttcattcttcaagaa
ctgcatatcttgccgagatcctcatccctaaaggtacttgacaatagtattattggagtc
gatacacaactcacaaaaaatacaagaagtcgactaggtggattggtccgagtgaagaga
aaaaaaagccatacagaactcaaaatcttttccggagatattcattttcctgaagaggcg
gataagatattaggtggcagtttgataccaccagaaagagaaaaaaaagattctaaggaa
tcaaaaaaaaggaaaaattgggtttatgttcaacggaaaaaatttctcaaaagcaaggaa
aagtattttgtttcggttcgacctgcagtcgcatatgaaatggacgaagggataaattta
gcaacacttttcccgcaggatctcctgcaagaagaggataatctccaacttcgacttgtc
aattttatttctcatgaaaatagcaagttaactcaaagaatttatcacacgaatagtcaa
ttcgttcgaacttgcttagtagtgaattgggaacaagaagaaaaagagggagctcgtgct
tctcttgttgaggtaaaaacaaatgatctaattcgcgatttcctaagaattgagttagtc
aagtctactattttgtatacacgaagaaggtatgataggacaagtgtaggattgattccc
aataataggttagatcgcaacaataccaattccttttattccaaggcgaagattcaatca
cttagccaacatcaagaagttattggcaccttgttgaatcgaaataaagaatatccatct
ttgatgattttgttggcatccaactgttctcgaattggtttattcaagaattctaaatat
cccaatgcggtaaaagaatcgaatcctagaattcctattcgagatatttttgggctctta
ggcgttattgtacctagtatatcgaatttttcttcatcttactatttattaacgcataat
cagatcttgttaaaaaaatacttgttccttgacaatttgaaacaaaccttacaagtactt
caaggacttaaatactctttaatagacgaaaataaaaggatttcgaattttgacagtaac
atcatgttggagccattccatttgaattggcactttctccatcatgactcatgggaagag
acattggcaataattcaccttggacaatttatttgtgaaaatttatgtctatttaaatta
cacataaaaaaatctggtcaaattttcattgttaatatggactcctttgttctaagagca
gctaagccttatttggccactataggagcaactgttcatggtcattatggaaaaatcctt
tacaaaggagataggttagttacgtttatatatgaaaaatcgagatccagtgatataacg
caaggtcttccaaaagtagaacaaatcttcgaagcgcgttcaattgattcactatcgccg
aatctcgaaaggagaattgaggattggaatgaacgtataccaagaattcttggggttccc
tggggattcttgattggagctgagctaaccatagcccaaagtcgtatctctttggttaat
aagatccaaaaggtttatcgatcccaaggggtacagatccataatagacatatagagatt
attatacgccaagtaacatcaaaagtaagggtttccgaagatggaatgtctaatgttttt
ttacctggggaattaataggactattgcgagcggaacgagcagggcgggctttagatgaa
tcgatctattatcgggcaatcttattgggaataacaagggcttccctgaatacccaaagt
ttcatatctgaagcaagttttcaagaaactgctcgagttttagcaaaagctgccctacga
ggtcgtattgattggttgaaaggtctgaaagaaaacgtagttctgggggggattatacct
gttggtaccggattccaaaaatttgtgcatcgttccccacaagacaagaacctttattta
gaaattcaaaaaaaaaatctattcgcgtcggaaatgagagatattttgtttctccataca
gaattagtttcttctgattctgacgtaacaaacaatttctatgaaacatcagagaccccg
tttacccctatttatacgatttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system