KEGG   Zymomonas mobilis subsp. mobilis ATCC 10988: Zmob_0556
Entry
Zmob_0556         CDS       T01875                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
zmm  Zymomonas mobilis subsp. mobilis ATCC 10988
Pathway
zmm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:zmm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Zmob_0556
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zmm03021]
    Zmob_0556
   03400 DNA repair and recombination proteins [BR:zmm03400]
    Zmob_0556
Enzymes [BR:zmm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Zmob_0556
Transcription machinery [BR:zmm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Zmob_0556
DNA repair and recombination proteins [BR:zmm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Zmob_0556
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AEH62401
UniProt: A0A0H3FXE3
Position
complement(646722..650897)
AA seq 1391 aa
MNELANFANPLASTEHFDHIQISLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVIEPGLTPLKKFQLLTEDELLEAQDQYGEDSFSAG
IGAEAVKKLLEALDLETEREDLLEELKHTKSELKPKKIIKRLKVVESFIESGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMDLRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGGNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITTGP
ELKLHQCGLPKKMALELFKPFIYSRLDAKGLSMTLKQAKKWVEKERKEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMLKENEPGEGMRLSNMTEVHQALNV
GAVTLHSKIISRVPQVNEQGETYMKRVETTPGRMLLGETLPQNYKVPFETINRLLTKKDI
ADVIDTVYRHTGQKDTVLFADAIMSLGFKYACKAGISFGKDDMIVPAAKEALVEETRALV
QDFEQQYQDGLITQQEKYNKVIDAWSRCGDRVAGEMMKEIQMVHKGPDGRELPVNAIYMM
AHSGARGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVVEDDCGTERALEMKAITQGGNVIASLGERILGRTLA
EDIMGTDGQVAIPIGTLLDEAHIAVIEKIGIQSVKIRSPLVCESHGGVCAACYGRDLARG
TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSHLEAVTDGRLQFRDLRTII
DPQGKQIALSRTGEVVLVGTDGRELASSRILLGAHLLHNDGDMVKKGDRLAEWDPFTIPV
ITESAGIVKYQDLVENQTLTEQVDEATGISQRVVIEYRAPRGKEDLRPRLTLMNGDSGET
ARYMLSPGTVISVDDGQEVLAGTVLARVSRESAKTRDITGGLPRVAELFEARKPKENAII
AKVSGRVEFGKDYKAKRKVIIRPDDGSEPIEYLVPKSKVIDAQEGDHVKRGDNLISGSPD
PHDILEVLGVEALAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLLKVEITHAGDSIFLP
GEQVEKEDFEAVNAKLESQGQEPAQATPILLGITKASLQTRSFISAASFQETTRVLTEAA
VQGKIDTLSGLKENVIVGRLIPAGTGAAMKRLRVTANSRDAALRAANKAVNFEQPTIAIE
SDNTDTPDAAE
NT seq 4176 nt   +upstreamnt  +downstreamnt
atgaacgaattagctaattttgccaatccgcttgccagtacagagcatttcgatcatatc
cagatcagtctggcctctcccgagcggatccgttcatggtcttttggcgagattaagaaa
cctgaaacgatcaattaccgcacctttaaaccggaacgggatggtcttttctgcgctcgt
atttttgggcctatcaaagattacgaatgcttgtgcggtaagtacaagcggatgaaatat
aaaggcattgtctgcgaaaaatgcggcgttgaagtcaccgtttccaaggtgcgccgtgag
cggatgggccatatcgaattggcagcgcctgttgcccatatttggtttttgaaatcactg
ccaagccgcatcggtcttctgcttgatatgcagttgaagcagcttgaacgcgtgctgtat
ttcgaaagctatattgttattgagccgggtctgacgcctttaaagaaattccagcttctg
accgaagatgaattgcttgaagcgcaagatcaatatggcgaagattccttctcggctggt
attggtgctgaggcggttaaaaagcttttggaagccttggatcttgaaacagaacgcgaa
gatctgcttgaagaactgaagcataccaaatccgaattaaagccgaaaaagatcattaaa
cgactgaaggtcgttgagagctttatcgaatccggcaaccgtcctgaatggatgattttg
gaagttattccggttattccgcctgaattacgtcctttggtgccgttggatgggggtcgt
tttgcgacttccgatttgaacgatctttatcgtcgcgttattaaccgtaacaaccgtctg
aaacgtctgatggatttgcgggcacctgatatcatcgtccgcaacgaaaagcggatgttg
caggaagccgttgatgctctgttcgataacgggcggcgtggtcgcacgattaccggcggt
aacaagcgtcctttgaaatctctttctgatatgctgaaagggaagcagggtcgtttccgt
cagaaccttttgggtaaacgcgtcgattattccggtcgttccgttattacgacgggccca
gaactgaaactgcatcagtgcggtttgccgaagaagatggcgcttgagctgttcaagccg
tttatctattcgcgtctggatgcgaagggtctgtcaatgaccctgaaacaggcgaagaaa
tgggtcgaaaaagagcggaaagaagtttgggatatccttgaagaggtcatccgcgaacat
ccggtgatgttgaaccgcgctccgaccttgcatcgtctgggtattcaggcctttgaaccg
gttttgatcgaaggtaaggctatccagcttcatcctttggtttgctcggcctttaatgct
gactttgatggtgaccagatggccgttcacgtgcctttgtcccttgaagcgcagcttgaa
gcccgcgttctgatgatgtccaccaacaatattctgtctccggcaaacggtaagccgatt
atcgtgccgtcgcaggatatggttctcggtatttattatctttcaatgttgaaagaaaat
gaaccgggtgaggggatgcgcctttccaatatgacggaagtgcatcaggccttgaatgtg
ggtgcggttaccttgcacagcaagattatcagccgtgtcccgcaggtcaatgagcagggc
gagacctatatgaaacgggtcgaaaccacgccgggtcggatgctgttgggtgaaaccctg
ccgcagaattacaaggttccttttgaaaccatcaaccgtctgttgacgaaaaaagatatc
gctgacgttatcgataccgtttatcgtcacaccggtcagaaagacacggttctttttgct
gatgcgattatgtccttgggctttaaatacgcctgtaaggccggtatctcctttggtaag
gatgatatgatcgttccggctgcgaaagaagccttggtcgaagaaacccgcgcccttgtt
caggatttcgagcagcaatatcaggatggtctgattacgcagcaggaaaaatacaacaag
gtcatcgacgcttggtcccgttgtggtgatcgcgtggccggtgaaatgatgaaagaaatc
cagatggttcataaaggaccggatggacgcgaattaccggttaacgccatttacatgatg
gcgcattcgggtgctcgtggttctgccgcccagattaaacagctggctggtatgcgtggt
ttgatggcaaaaccgtcaggtgaaatcattgaaaccccgatcatttcgaactttaaggaa
ggtttgaccgtccttgaatactttaactcgacccatggtgcccgtaagggtctggctgat
acggctctgaaaaccgcgaactctggttatctgacccgtcgtttggttgacgtcagtcag
gattgcgttgttgttgaagatgattgcggcaccgagcgcgcccttgaaatgaaagcgatt
acgcaagggggtaatgttatcgcctccttgggtgaacgtattttgggtcggactttggcc
gaagatatcatgggaaccgatggtcaggtcgccattccgatcggcaccctgttggatgaa
gcccatatcgcagttatcgaaaaaatcggtatccagtctgtgaaaattcgcagcccattg
gtctgtgaatcacatggtggtgtttgtgccgcttgctatggtcgtgaccttgcccgtggt
acgccggtgaatatcggtgaagcggtcggtgttatcgccgcccagtctatcggtgaaccg
ggaacccagttgacgatgcgtaccttccatatcggtggtgctgctcagttgaatgaacag
tcccatttggaagccgttaccgacggtcgtttgcagttccgtgatcttcgcacgatcatt
gatccgcagggtaagcaaattgctttgagccggacgggtgaagttgtgttggtcggcact
gatggacgcgagctggcttccagccgtattctcttgggtgctcatctccttcataacgat
ggtgatatggtcaagaagggcgaccgtttggctgaatgggatccgttcaccattccggtt
atcacggaaagcgccggtatcgttaaatatcaggatttggttgaaaaccagaccttgacc
gaacaggttgacgaagccaccggtatttctcagcgtgtcgttatcgaatatcgcgccccg
cgtggtaaggaagatttacgtccgcgtttgaccttgatgaatggcgattctggcgagact
gcccgttacatgttgtcaccaggaacggttatttccgttgacgatggtcaggaagttctg
gccggtacggttcttgcccgtgtcagccgtgaatcggccaagacccgtgatattaccggt
ggtcttccgcgtgtggctgaattgtttgaagcccgtaagccgaaagaaaatgcgatcatt
gcgaaagtatccggtcgcgttgaattcggtaaggattacaaggccaagcggaaagttatc
attcgtccggatgatggttcggaaccgattgaatatctggtcccgaaatccaaggttatt
gacgcgcaggaaggcgatcacgttaaacggggtgataacctgattagcggtagccctgat
ccgcatgatattcttgaggtcttgggtgttgaagccttggctgaatatctggtttcggaa
attcaggaagtgtatcgtctgcagggtgtgaaaatcaacgataagcatatcgaaacgatt
gttcgtcagatgttgctgaaagttgaaattacccatgcgggtgacagcatcttcttgccg
ggtgaacaggtcgaaaaagaagactttgaagcggtcaatgctaaattggaaagccaaggt
caggaaccagcacaggcaacgccgatcttgctgggtattaccaaggcatccttgcagacc
cgcagcttcatttctgccgcatctttccaagaaacaacgcgtgttctgacggaagccgct
gttcagggtaaaattgataccttaagcggtctgaaagaaaacgtcattgtgggtcgtttg
atcccagccggaacgggtgctgccatgaagcgtcttcgtgtgacagctaacagccgtgat
gctgctttacgggctgcgaataaggcggttaattttgaacagccgactatcgctatcgaa
agcgacaacacggatacaccggatgcagctgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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