KEGG   Zootermopsis nevadensis (dampwood termite): 110829725
Entry
110829725         CDS       T05136                                 
Name
(RefSeq) replication factor C subunit 1 isoform X1
  KO
K10754  replication factor C subunit 1
Organism
zne  Zootermopsis nevadensis (dampwood termite)
Pathway
zne03030  DNA replication
zne03410  Base excision repair
zne03420  Nucleotide excision repair
zne03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:zne00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110829725
   03410 Base excision repair
    110829725
   03420 Nucleotide excision repair
    110829725
   03430 Mismatch repair
    110829725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:zne03032]
    110829725
   03400 DNA repair and recombination proteins [BR:zne03400]
    110829725
DNA replication proteins [BR:zne03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110829725
DNA repair and recombination proteins [BR:zne03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110829725
SSDB
Motif
Pfam: RFC1 AAA BRCT AAA_22 Rad17 AAA_14 AAA_30 RNA_helicase PTCB-BRCT AAA_33 NTPase_1 RuvB_N AAA_5 AAA_16 AAA_18 BRCT_2 nSTAND3 Zeta_toxin AAA_17 AAA_6 AAA_19
Other DBs
NCBI-GeneID: 110829725
NCBI-ProteinID: XP_021919424
Position
Unknown
AA seq 1005 aa
MSHDIRSYFLPTAGNGKKDKNKREVKRKRQVLDSDSEEEFLPTKVKNHKGNCDFSGSCAR
NGKEKNDKYSCKSELKPVDVGDVFGYSQVKRTLSRKCAEKNKVMEDVKPKLENQHANSDF
EATLQELNEQKLVCKKEKEKAHKKEKEKDGLHTSELSESVVVLYNMPRNVTEERQSKNDK
ELLNDKKENKEKEATRLSSQARTSSDLPKKNKKCIDVNQHVRNEGNNKQEDVRSLLPADS
SSSDDVFERKKQHAAQYQRYLQREGPKNPGGKAVPQGKPGCLSGLVFVVSGVLETIDREQ
VTALVKQCGGRVTSSVSRNTSYLVVGDEPGPAKIEKAIKLNTTQLTEDGLFDLIRTKSGP
PDSSEMLRKKLKKHIDKDDEIKRNGKLCSNDSTCELGIKPLQTIKKGKTSMPEKWSIPSP
AESGDSTFHQHSLWADKYKPLSTKQIIGQQGDRSNVKKLVSWLQGWHSNHSGKKKLVRPS
PWAKDDTGNFFKAALLSGPPGVGKTTTVHLVCKELGFDIVEFNASDTRSKKLLHEEVSEL
LSNKSLSGYFQGAAARKPTENHVLVMDEVDGMAGNEDRGGMQELIQLIKSCRVPVICMCN
DRHHQKIRSLTNYCFDLQFSRPRVEQIRGAMMSICYKEGIKIHPEALNDIITGANHDIRQ
VLHHLSMWSVKDKHLSTERAKEESHKAKKDIKLGPWDVLKKVFSADAHKTMSIHDKSDLF
FHDYSLGPLFVQENYLSVMPHKVRGNRKRHLELVAQTAESLSTGDIVEKSIRSRNAWSLL
PTQAMLSSVLPGHIMEGHLTSQISFPAWLGKNSRRSKFERLLQELHMHMRLSISGSKEAV
NLDYLTHLRDSVVSPLINNGLDGVAATIHIMQNYYLLREDIDSLMEISLWPNQKDPLSCV
NSKVKAAFTRTVNKEGIMTPYSVINIKKSASKFNQDSDIVGDGQDDENGDEVEEDEEDIT
KDAMIKKAKKRPAAVNDHAPGGSGSKRQKVVGKGIKKKCDMGKGK
NT seq 3018 nt   +upstreamnt  +downstreamnt
atgtcacacgatatacgatcgtattttttacctactgccggaaatgggaagaaagataaa
aataagcgagaagtgaaacgtaagaggcaagttctcgattctgattccgaagaggaattc
ttgccgacgaaggtgaaaaatcataaaggaaattgtgatttctcaggtagttgtgccaga
aatggaaaggaaaagaatgataagtattcatgcaagtctgaattgaaacctgtggatgta
ggagatgtgtttggttacagtcaggttaaaagaactttatctaggaaatgtgcagaaaaa
aacaaggtcatggaagatgttaagcccaaattggagaatcagcatgcaaattcggatttt
gaagcaacattacaggaactgaatgaacagaaacttgtgtgtaaaaaggaaaaggaaaaa
gctcataagaaagaaaaagagaaagatggactgcatacttcagaattaagtgaaagtgtt
gttgtattgtataatatgcccagaaatgttacagaagagagacagagtaaaaatgataaa
gaattattaaatgacaagaaggaaaacaaggagaaagaagctaccagattgagttcccag
gctagaacttcttcagatttgcccaagaaaaataaaaaatgtatagatgtaaaccagcat
gtgagaaatgaaggtaataataagcaggaagatgtcagaagtttgctgcctgctgatagt
agctccagtgatgatgtatttgagaggaagaaacaacacgcagcacagtaccaaagatat
ctacaacgagagggcccaaaaaatccaggggggaaggcagtaccacagggaaaaccaggt
tgcttgtcgggactggtgtttgttgtgagcggagtgttggagacaatagatcgggaacag
gtgactgctctcgttaaacagtgtggtggtcgtgtgacttccagtgtcagccgcaacact
agctaccttgtagtgggagatgaacctgggccagcaaaaatagagaaggcaataaaatta
aacacaacgcagctaactgaggatgggctgtttgatctgattcgaacaaaatcaggacca
ccagacagttcagaaatgctgagaaaaaagttgaagaaacatattgataaggatgatgag
attaaaagaaatggtaaattgtgctcaaatgatagtacatgtgaattgggtataaagcca
ttgcagactattaagaaaggaaaaacatcaatgcctgaaaaatggagtattccatcacct
gcagaatctggggacagcacctttcatcagcattctctctgggctgataagtataagcct
ttgtctaccaagcagatcataggtcagcaaggtgaccgcagcaatgtgaagaaattggtc
agttggctgcagggatggcattctaaccactcaggaaagaagaagcttgtacggccaagt
ccatgggcaaaagatgatactggtaatttcttcaaagctgcattgttatcaggtccccca
ggtgttgggaaaacaacaacagtgcatcttgtctgtaaggaacttggatttgatattgtg
gagttcaatgcgtcggatacaagatcaaaaaaattactgcatgaagaagtttctgagctg
cttagcaacaagtcactgtctggatattttcagggtgctgcagcaagaaaaccaacagaa
aatcatgttctggtaatggatgaagttgatggtatggcgggcaatgaggatcgaggtggc
atgcaggaactgatccagctgatcaagagctgtcgagtaccagtgatctgcatgtgcaat
gatcgccatcaccagaaaatcagaagtctcacaaattactgttttgacctccagtttagt
agacccagggttgaacagatacggggtgcaatgatgtccatttgttataaggaaggaata
aaaatccaccctgaggctttaaacgatataatcactggtgcaaatcatgatattcgccaa
gtgttgcatcacttgtcaatgtggtctgtgaaagataaacatctctctaccgaaagagcc
aaagaggagtctcacaaggccaagaaggatattaagttgggtccttgggatgtcttgaag
aaagtgttttctgcagatgcgcacaagacaatgtcaattcatgacaagtcagacctcttc
ttccatgactacagtctgggtcctctgtttgtgcaagagaactatttatcagtgatgccc
cacaaagttaggggcaacagaaagagacatttggagcttgttgcgcagacagcagagagt
ctcagcacaggggatatagtagagaagtctataagaagtagaaatgcatggagtttgttg
cctacacaggctatgctttcaagtgtcttgcctggtcatatcatggaaggccaccttact
tcccagatcagctttccagcatggctgggaaagaactcacgcagaagtaagtttgaacga
cttctacaagaacttcacatgcacatgaggctgagtatctctggcagcaaggaagctgtt
aatttggactatctaacacatctgcgagactcagtagtgagtcccttaatcaataatggt
ttggatggagttgctgccacaattcacatcatgcagaactactatctgctgagagaggac
atcgacagtctcatggaaatcagtctgtggcccaatcagaaggacccgctgtcttgtgtc
aacagcaaggttaaagcagcttttacccggacagtcaataaggaaggcatcatgacacca
tactctgttataaacatcaagaaaagtgcatcgaagtttaaccaagattcagacattgtt
ggtgatggccaggatgatgaaaatggagatgaggtggaggaagatgaggaagacattaca
aaagatgcaatgattaagaaggccaagaagcgacctgctgcagtgaatgatcatgcacca
ggagggagtggctcaaagagacagaaggttgttggtaaaggaattaaaaagaaatgtgat
atgggcaaaggaaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (242)   
   KEGG ORTHOLOGY (1)   
   RefGene (238)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (21)   
   Pfam (21)   
All databases (277)   

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