KEGG   Zootermopsis nevadensis (dampwood termite): 110838082
Entry
110838082         CDS       T05136                                 
Name
(RefSeq) regulator of nonsense transcripts 1
  KO
K14326  regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3]
Organism
zne  Zootermopsis nevadensis (dampwood termite)
Pathway
zne03013  Nucleocytoplasmic transport
zne03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:zne00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110838082
   03015 mRNA surveillance pathway
    110838082
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zne03019]
    110838082
Enzymes [BR:zne01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     110838082
Messenger RNA biogenesis [BR:zne03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     110838082
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     110838082
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII UvrD-helicase DEAD AAA_16 Helicase_RecD SLFN-g3_helicase ATPase nSTAND3 SRP54 AAA_22
Other DBs
NCBI-GeneID: 110838082
NCBI-ProteinID: XP_021936594
Position
Unknown
AA seq 1120 aa
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSQSQTQASQLDAGQIQTTQ
SQVNGEVGENGIDTDLTATTKALGELQFEEEDDEAYYNKDLPEYACKYCGIHDPSCVVMC
NVCKKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYSCGVRNVFVLGFI
PAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIADRCFLTWLVKIPSEQEQLRARQI
SAMQINKLEELWKDNADATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYD
KKLKESQTQENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYLGELHKPWSGV
GHVIKIPDNFGEEVGIELKNNSGAPTDCISHFVVDFIWKSTSFDRMQLALRKFAVDDSSV
SGYIYHRLLGHDVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGTG
KTVTSATIVYHLVKQSGGSVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIESPVS
FLALHNQIRNMDCNTELQKLQQLKDETGELSSVDEKRYRMLKKAAEKELLEAADVICCTC
VGAGDPRLQRLKFHSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCAEERKLTKIEF
PWPQQDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKLATRFLRCGVKPEQIGVITPYE
GQRAYLVQYMQYQGSLHAKLYQEIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPR
RLNVALTRSKYGIIIVGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLNNLKESLIQFSKPK
KLVNAANPGTHFMSTSVYDAREALVPGSVYDRTGHMNGTSAPSHFFPRPNGGGVAVDMYT
RTHDPISYISPERAQAALSNLPVPVGMFMNMAHVPPRFYNQHQQAVQARQNQRNRAATRN
KVKNSRNNVAKNSLTSGQGSQDATQPYSPLTQGMSQSMSQPGFSLSQPGLSQPELSQDSY
MVGEYQSQMDGLLSQDSTYQGDRSAFYPGPSQGGQFSQPY
NT seq 3363 nt   +upstreamnt  +downstreamnt
atgagtgtagatgcctatggaccaagctcgcaaacgcttacattcttggacacggaagaa
gcagatttgattggtgctgatactcaaggatccgagtttgatttcacagattttacacta
ccttcacaaagccaaacacaggcttcacaattggatgctggacaaatccaaactacacaa
agtcaggtgaatggcgaggttggagaaaatggtatagatactgacctaacagctacaact
aaagctcttggggaattgcagtttgaagaggaagatgatgaagcctactacaataaggat
ttgccagaatatgcatgtaaatactgtggaatacatgatccgagttgtgtggtcatgtgc
aatgtctgtaaaaaatggttctgcaatggtcgaggaaatacgtccggttctcatattatc
aaccatcttgtcagagccaaacacaaggaagtgactttgcataaggatggtccacttggc
gagactgttctggaatgttattcctgtggtgtgaggaatgtgtttgttttgggttttatc
ccagccaaagcagactcggtcgtcgtactcctttgtcgtcagccctgtgctgcccaaagt
tctctgaaagatatgaactgggaccaagaacaatggaagccacttatcgcagaccgttgt
ttcttaacctggctggtaaagattccttcggagcaggaacaacttcgagcaaggcagata
tctgctatgcagataaacaagttggaagaactttggaaggacaatgctgatgctaccttt
caggatttagaaaaaccaggtgttgacgaggaaccacagcaagtattgctgagatacgaa
gatggttatcagtatcagaacatatttggaccattggtgaagttggaggctgactacgac
aagaaactaaaagaatcacagacacaagaaaatattgaagtccgctgggatgttggactc
aacaagaagacaatagcatatttcactcttgctaaaactgacggagacatgaagttgatg
catggagatgaattgcgtctacgctacctgggggaactgcacaagccatggtcaggagtg
ggtcatgtgatcaaaataccagataattttggtgaagaagttggtattgaactgaagaac
aatagtggtgcccctactgactgtatctcacactttgttgttgacttcatttggaaatca
acttcatttgatagaatgcagttggccctaaggaaatttgctgttgatgactcctcagta
tctggttacatatatcataggttgcttggtcatgatgtagaggaagtcttgtttcgctgt
catctaccaaaacatttttcagcgcctaatcttccagacctgaaccgttcacaggtttat
gcagtgaaacatgcagttcagcgtccactgtcactaatccaaggtccaccaggaacaggc
aaaactgtcacatcagccaccatcgtttaccacctggtgaagcagagcggtggctccgtc
ctagtttgtgctccttccaatatagctgttgaccagctgactgagaaaattcaccgaaca
gggcttaaagtggtgcgtctttgcgccaaatcccgcgaggccattgagtctcctgtctca
ttccttgctctccacaatcagatacgcaacatggattgtaacactgagctacagaaatta
cagcaacttaaagatgagactggagaactttcatctgtagatgagaagcgttaccgaatg
ttgaagaaagcagcagagaaggagctccttgaggcagccgatgtgatatgctgcacctgc
gtgggagccggtgatccccgtctccaacgattgaagttccactcaattcttattgatgag
agcatgcagtccaccgaaccagaatgtatggttccagttgtcttaggagccaagcagctg
atccttgtcggagaccattgccagctgggtcctgtagtgatgtgcaagaaggcggctcgt
gctggcttatcacagtcattatttgagagattggttgttctggggatccgtccattccgg
ttggaagtacagtatcgaatgcatcctgaactgtctcgtttcccctccaattttttctac
gagggctccctccagaatggtgtttgtgcagaggaacgcaaactgaccaaaattgagttc
ccgtggccacagcaggacaagccgatgttcttttatgtgacacagggtcaagaagaaatt
gcagggtcgggaacttcgtatttaaatcgtactgaagcctctaatgtggagaagctggcg
acacgcttcttgcgttgcggtgtaaaacccgaacagatcggtgttattaccccttatgaa
ggacagcgagcttacttggttcagtatatgcagtaccaagggtctcttcatgctaagttg
taccaggagattgaggtggcaagtgttgatgcattccaaggcagagagaaggatttaatt
attatgtcatgtgtccgttctaacgaacatcaagggattggattcctcaatgatccacgg
cgtctcaatgtagctcttacccgttcaaaatatggcatcattattgttggaaatccaaaa
gtgctatctaagcaaccactgtggaatcatctgcttaatttctacaaagaacagaaagtt
ctggtagaaggaccattgaacaacttgaaagagtcgctaatccagttctcaaaacccaag
aagcttgtaaatgcagctaatcctgggacacacttcatgtccacatctgtgtatgatgca
cgtgaggctctggtcccgggaagtgtgtatgaccgaacggggcatatgaatggtacatct
gcaccgtcccacttcttccccagaccaaatggtggaggcgtcgcagtggatatgtatact
cggactcatgatccgataagctacatctcaccagagagagcacaggccgcactttcaaac
cttcctgtgcctgttgggatgtttatgaatatggcacatgtcccacctcgcttttataac
caacatcaacaggcagtgcaagcacgtcagaaccagcgaaatcgtgctgcaactcgcaac
aaggtcaagaatagtcgcaataatgtagccaagaacagcttgacatctggacaagggagt
caagatgccactcagccatacagtccactcacacagggaatgtctcagagcatgtctcag
cctgggttcagtttgtctcagccaggtctttcccagccagaactgtctcaggatagctat
atggtgggcgagtatcagtcacagatggatggacttctctctcaagattctacatatcag
ggagatcgctcggctttctacccgggcccatcacagggaggacagttctctcagccatac
tga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (251)   
   KEGG ORTHOLOGY (1)   
   RefGene (247)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (277)   

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