Entry
Name
[histone H3]-trimethyl-L-lysine27 demethylase;
KDM6A (gene name);
KDM6C (gene name);
UTX (gene name);
UTY (gene name);
JMJD3 (gene name)
Class
Oxidoreductases;
Acting on paired donors, with incorporation or reduction of molecular oxygen;
With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
BRITE hierarchy
Sysname
[histone H3]-N6,N6,N6-trimethyl-L-lysine27,2-oxoglutarate:oxygen oxidoreductase
Reaction(IUBMB)
a [histone H3]-N6,N6,N6-trimethyl-L-lysine27 + 2 2-oxoglutarate + 2 O2 = a [histone H3]-N6-methyl-L-lysine27 + 2 succinate + 2 formaldehyde + 2 CO2 (overall reaction) [RN:
R12459 ];
(1a) a [histone H3]-N6,N6,N6-trimethyl-L-lysine27 + 2-oxoglutarate + O2 = a [histone H3]-N6,N6-dimethyl-L-lysine27 + succinate + formaldehyde + CO2 [RN:
R12460 ];
(1b) a [histone H3]-N6,N6-dimethyl-L-lysine27 + 2-oxoglutarate + O2 = a [histone H3]-N6-methyl-L-lysine27 + succinate + formaldehyde + CO2 [RN:
R09510 ]
Reaction(KEGG)
Substrate
[histone H3]-N6,N6,N6-trimethyl-L-lysine27;
2-oxoglutarate [CPD:
C00026 ];
O2 [CPD:
C00007 ];
[histone H3]-N6,N6-dimethyl-L-lysine27
Product
[histone H3]-N6-methyl-L-lysine27;
succinate [CPD:
C00042 ];
formaldehyde [CPD:
C00067 ];
CO2 [CPD:
C00011 ];
[histone H3]-N6,N6-dimethyl-L-lysine27
Comment
Requires iron(II). This entry describes a group of enzymes that demethylate N-methylated L-lysine residues at position 27 of histone H3 (H3K27). The enzymes are dioxygenases and act by hydroxylating the methyl group, forming an unstable hemiaminal that leaves as formaldehyde. They can act on tri- and di-methylated forms, but have no activity with the mono-methylated form.
History
EC 1.14.11.68 created 2019
Orthology
K11447 lysine-specific demethylase 6A
K11448 lysine-specific demethylase 6B
K23742 lysine-specific demethylase 6C
Genes
HSA : 23135(KDM6B) 7403(KDM6A) 7404(UTY)
PTR : 112204057 449579(UTY) 465593(KDM6A) 468438(KDM6B)
PPS : 100971965(KDM6B) 100981353(KDM6A)
GGO : 101145831(KDM6A) 101146851(KDM6B)
PON : 100440779(KDM6B) 100455632(KDM6A)
NLE : 100581756(KDM6B) 100592229(KDM6A)
HMH : 116458715(KDM6B) 116811472 116811622(KDM6A)
MCC : 100270704(UTY) 100427119(KDM6A) 716348(KDM6B)
MCF : 102122893(KDM6A) 102138681(KDM6B)
MTHB : 126939646 126945536 126947158
MNI : 105463462(KDM6A) 105473717(KDM6B)
CSAB : 103231851(KDM6A) 103242325(KDM6B) 103246976(UTY)
CATY : 105582140(KDM6B) 105590543(KDM6A)
PANU : 101004686(KDM6A) 101010194(KDM6B) 116272355
TGE : 112610247(KDM6B) 112615322(KDM6A)
MLEU : 105541663(KDM6A) 105549864(KDM6B)
RRO : 104657060(UTY) 104661704(KDM6B) 104681961(KDM6A)
TFN : 117067744(KDM6B) 117078283(KDM6A)
PTEH : 111527087(KDM6B) 111535634 111536376(KDM6A)
CANG : 105509441(KDM6A) 105523630(KDM6B)
CJC : 100405718(KDM6A) 100414637(KDM6B)
SBQ : 101030793(KDM6A) 101031578(KDM6B)
CIMI : 108285076(KDM6A) 108297774 108306551(KDM6B)
CSYR : 103250462(KDM6A) 103264658(KDM6B)
MMUR : 105865482(KDM6A) 105877396(KDM6B)
LCAT : 123629096 123650906(KDM6B)
PCOQ : 105809060(KDM6A) 105819444(KDM6B)
OGA : 100962678(KDM6B) 100966631(KDM6A)
MMU : 216850(Kdm6b) 22289(Kdm6a) 22290(Uty)
MCAL : 110286985(Kdm6a) 110304445(Kdm6b)
MPAH : 110313380(Kdm6a) 110331384(Kdm6b)
RNO : 100310845(Uty) 103689969(Kdm6a) 363630(Kdm6b)
MCOC : 116072103(Kdm6a) 116077735(Kdm6b) 116096502
ANU : 117694151(Kdm6a) 117695965 117711728(Kdm6b)
MUN : 110542546 110555144(Kdm6b)
MAUA : 101834877(Kdm6b) 101835186(Kdm6a)
PROB : 127214697 127218474(Kdm6a) 127219068(Kdm6b)
PLEU : 114680956(Kdm6a) 114693164(Kdm6b)
MORG : 121437302 121441027 121441113 121456110(Kdm6b)
MFOT : 126512864 126513913
AAMP : 119805098(Kdm6a) 119811177(Kdm6b)
NGI : 103731790(Kdm6a) 103752113(Kdm6b)
HGL : 101703654(Kdm6b) 101706268(Kdm6a)
CPOC : 100713465(Kdm6a) 100733106(Kdm6b)
CCAN : 109680035 109683662(Kdm6a) 109693893(Kdm6b)
DORD : 105983450(Kdm6b) 105996650(Kdm6a)
DSP : 122100357(Kdm6b) 122110894(Kdm6a) 122115517 122115540
NCAR : 124972020 124972118 124979235
OPI : 101524486(KDM6A) 101535492(KDM6B)
TUP : 102482383(KDM6B) 102487244(KDM6A) 102494740
GVR : 103591214(KDM6A) 103593652(KDM6B) 103593947
CFA : 489481(KDM6B) 491845(KDM6A)
CLUD : 112647426(KDM6B) 112673155(KDM6A)
VVP : 112911969 112924857(KDM6B) 112930002(KDM6A)
VLG : 121483572(KDM6A) 121499575(KDM6B)
AML : 100476598(KDM6A) 100477084(KDM6B)
UMR : 103660480(KDM6B) 103666195(KDM6A) 103680203
UAH : 113248376 113265907(KDM6A) 113271139(KDM6B)
UAR : 123792122(KDM6B) 123802284(KDM6A) 123803731
ELK : 111139444 111150336 111161179
LLV : 125087112 125091351 125092595
MPUF : 101670258(KDM6B) 101675513(KDM6A)
NVS : 122897470(KDM6A) 122906721(KDM6B)
ORO : 101383856 101385984(KDM6B) 101386674
EJU : 114216709(KDM6A) 114225289(KDM6B)
ZCA : 113930309(KDM6A) 113939519(KDM6B) 118356620
MLX : 118000038(KDM6B) 118009451(KDM6A) 118009497
NSU : 110573547(KDM6A) 110580574 110584485(KDM6B)
LWW : 102726938(KDM6A) 102741494(KDM6B)
FCA : 101088307(KDM6A) 101100010(KDM6B)
PYU : 121015749(KDM6B) 121024775 121026124(KDM6A)
PBG : 122477307(KDM6A) 122484907(KDM6B)
LRUF : 124509470 124519662
PTG : 102955246 102962926(KDM6A)
PPAD : 109246086(KDM6B) 109248052(KDM6A)
AJU : 106972505(KDM6B) 106972538(KDM6A) 106985056
HHV : 120231475(KDM6B) 120245058(KDM6A)
BTA : 100140276(KDM6B) 280952(KDM6A)
BOM : 102273800(KDM6B) 102274742(KDM6A)
BIU : 109555184(KDM6A) 109555600 109573750(KDM6B)
BBUB : 102395023(KDM6B) 102400345(KDM6A)
BBIS : 104983301(KDM6A) 104990895(KDM6B)
CHX : 102168575(KDM6B) 102191597(KDM6A) 108634619
OAS : 101103543(KDM6A) 101119656(KDM6B)
ODA : 120860170 120866030(KDM6B) 120882233(KDM6A)
CCAD : 122434312 122435115(KDM6A) 122445677(KDM6B)
SSC : 100154376(KDM6A) 100512495(KDM6B) 110255320
CFR : 102523561(KDM6B) 102523633(KDM6A)
CBAI : 105077581(KDM6B) 105079353(KDM6A)
CDK : 105085270(KDM6A) 105103070(KDM6B)
VPC : 102541196(KDM6B) 102544888(KDM6A)
BACU : 103003878(KDM6A) 103016921(KDM6B)
LVE : 103073128(KDM6A) 103083949(KDM6B)
OOR : 101269349(KDM6A) 101284645(KDM6B)
DLE : 111165558(KDM6A) 111185695(KDM6B)
PCAD : 102976704(KDM6B) 102983773(KDM6A)
PSIU : 116745102(KDM6B) 116748000(KDM6A)
NASI : 112396007 112398816(KDM6A) 112401883(KDM6B)
ECB : 100059800(KDM6A) 100073033(KDM6B)
EPZ : 103540613 103545327 103567521(KDM6A)
EAI : 106825057 106827448(KDM6A) 106844144(KDM6B)
MYB : 102241356(KDM6A) 102242922(KDM6B) 102260650
MYD : 102756321(KDM6A) 102767919(UTY) 102775429(KDM6B)
MMYO : 118653897(KDM6A) 118660160 118672088(KDM6B)
MLF : 102430950(KDM6A) 102441885(KDM6B)
MNA : 107533023 107541456(KDM6A) 107544494(KDM6B)
PKL : 118712118 118726848(KDM6B) 118731696(KDM6A)
HAI : 109386479(KDM6A) 109395116(KDM6B)
DRO : 112306833 112308749(KDM6B) 112322497(KDM6A)
SHON : 118974713(KDM6B) 118981094(KDM6A) 119000751
AJM : 119041661(KDM6A) 119053531(KDM6B)
PDIC : 114489888 114504866(KDM6A) 114515232(KDM6B)
PHAS : 123809206(KDM6B) 123832843(KDM6A)
MMF : 118616759 118633878(KDM6B) 118635629(KDM6A)
RFQ : 117013325(KDM6B) 117022216(KDM6A)
PALE : 102882574(KDM6A) 102891492(KDM6B) 102897701
PGIG : 120586015 120589682(KDM6B) 120593674(KDM6A)
PVP : 105291231(KDM6B) 105305439(KDM6A)
RAY : 107502042 107515683(KDM6B) 107521705(KDM6A)
MJV : 108383384(KDM6B) 108391267(KDM6A)
TOD : 119230736(KDM6B) 119246208(KDM6A) 119250803
SARA : 101537217(KDM6A) 101557329(KDM6B)
LAV : 100669039(KDM6A) 100669880(KDM6B)
ETF : 101649226(KDM6A) 101657145(KDM6B)
DNM : 101425792(KDM6B) 101439545(KDM6A)
GAS : 123242439(KDM6A) 123244276(KDM6B)
SHR : 100914132(KDM6B) 100931212(KDM6A)
PCW : 110194281(KDM6B) 110214916(KDM6A)
OAA : 100081798(KDM6A) 103167751(KDM6B)
TGU : 100231869(KDM6A) 115492722
LSR : 110474877(KDM6A) 110481217(KDM6B)
PMOA : 120509526 120511895(KDM6A)
PHI : 102100209(KDM6B) 102104710(KDM6A)
SVG : 106853491(KDM6A) 106863816(KDM6B)
NPD : 112944704(KDM6A) 112957730
ASN : 102375331(KDM6A) 102378019(KDM6B)
AMJ : 102565918(KDM6B) 102573879(KDM6A)
PSS : 102452800(KDM6B) 102457422(KDM6A)
CMY : 102935096(KDM6A) 102947171(KDM6B)
CPIC : 101934912(KDM6A) 101935571(KDM6B)
CABI : 116836973 116839643(KDM6B)
MRV : 120381504(KDM6B) 120404938(KDM6A)
ACS : 100561474(kdm6b) 100564779(kdm6a)
PVT : 110074058(KDM6A) 110087745(KDM6B)
SUND : 121926155(KDM6A) 121935205(KDM6B)
PBI : 103063217 103065886(KDM6B) 103066017
PMUR : 107286489 107299463(KDM6B)
CTIG : 120305723(KDM6B) 120319351(KDM6A)
TSR : 106548216 106551474(KDM6A) 106552123(KDM6B)
PGUT : 117669433(KDM6A) 117671253(KDM6B)
VKO : 123016601(KDM6B) 123029585(KDM6A)
PMUA : 114582422(KDM6B) 114596145(KDM6A)
ZVI : 118084846(KDM6A) 118094254(KDM6B)
HCG : 128329369(KDM6B) 128349011(KDM6A)
GJA : 107109235(KDM6A) 107119809(KDM6B)
STOW : 125431091(KDM6A) 125443974(KDM6B)
XLA : 108703539(kdm6b.S) 108708200 108711772(kdm6b.L) 446609(kdm6a.S)
XTR : 100170558(kdm6a) 779446(kdm6b)
NPR : 108794712(KDM6A) 108794738(KDM6B)
RTEM : 120927406(KDM6A) 120933570(KDM6B)
BBUF : 120986566(KDM6B) 120994924(KDM6A)
BGAR : 122927242(KDM6B) 122930314(KDM6A)
DRE : 556678(kdm6ba) 563644(kdm6bb) 569207(kdm6al) 569277(kdm6a)
SRX : 107707072 107719779 107720684 107742353 107748151 107749406 107750839 107756727
SANH : 107664277 107673695(kdm6a) 107673971 107675439 107676007 107678007 107695454 107703100
SGH : 107554308 107556731 107564831 107565949(kdm6a) 107586158 107595280(kdm6b) 107595870 107597043
CCAR : 109095461(kdm6a) 109100061 109100062
CAUA : 113050117 113052186 113053109 113054205 113093074 113102774 113105649 113105851 113108167
CGIB : 127959181 127961481 127964861 127966395 128016097 128017185 128019956 128021239
PPRM : 120465180(kdm6al) 120469505(kdm6ba) 120481811(kdm6bb) 120482231(kdm6a)
MAMB : 125260013(kdm6bb) 125265569(kdm6ba) 125270126(kdm6a) 125273422(kdm6al)
CIDE : 127514078 127515232 127518380 127520124
MASI : 127432488 127433182 127445763 127446728 127446745 127447679 127448886 127455100
IPU : 108266585(kdm6a) 108267706(kdm6ba) 108272609(kdm6al) 108277160(kdm6bb)
PHYP : 113524185 113524844(kdm6a) 113540439(kdm6b) 113545870
SMEO : 124379200(kdm6a) 124386865(kdm6ba) 124389357(kdm6al) 124393518(kdm6bb)
TFD : 113643103 113650288(kdm6bb) 113654518(kdm6a) 113654702(kdm6ba)
AMEX : 103021707 103025477(kdm6a) 103028490 103028970(kdm6b)
EEE : 113574337(kdm6a) 113580619 113582585 113585093(kdm6b)
TRU : 101065748 101067688(kdm6a) 101078029
TNG : GSTEN00013496G001 GSTEN00020368G001 GSTEN00027181G001
LCO : 104920017 104925205(kdm6b) 104934715(kdm6a) 104937847
NCC : 104942379 104954641(kdm6a) 104964153(kdm6b)
CGOB : 115016978 115018839 115023965 115026225(kdm6a)
ELY : 117246505(kdm6ba) 117247136 117249797(kdm6a) 117250080
EFO : 125883328(kdm6ba) 125884646 125898074 125899236(kdm6a)
PLEP : 121948731(kdm6a) 121952575 121961826(kdm6ba) 121962859
SLUC : 116042290(kdm6ba) 116044629 116047057(kdm6a) 116064771(kdm6bb)
ECRA : 117934927(kdm6ba) 117939341 117953083(kdm6a) 117956101(kdm6bb)
ESP : 116674154 116697837(kdm6a) 116699982 116707382(kdm6b)
PFLV : 114546182(kdm6b) 114551161 114564534(kdm6a) 114566359
GAT : 120821599 120821718(kdm6ba) 120825076 120834389(kdm6a)
PPUG : 119209894 119215193 119223326(kdm6ba) 119228459(kdm6a)
MSAM : 119895078(kdm6bb) 119902297 119904594(kdm6a) 119911581(kdm6ba)
CUD : 121504442(kdm6ba) 121506191 121519233(kdm6bb) 121522394(kdm6a)
ALAT : 119015660 119026117(kdm6a) 119027366(kdm6ba) 119031734(kdm6bb)
MZE : 101465943(kdm6b) 101471086 101474873 101478580(kdm6a)
ONL : 100694035 100699848 100712234(kdm6b) 100712385(kdm6a)
OAU : 116311192(kdm6a) 116328877 116329126(kdm6bb) 116329922(kdm6ba)
OLA : 101160692 101161131 101164833 101167156(kdm6a)
OML : 112142481(kdm6bb) 112154991(kdm6a) 112156329(kdm6ba) 112160186
XMA : 102220386 102225181 102228979(kdm6a) 102237438
XCO : 114140414 114147813(kdm6a) 114153368 114157363(kdm6b)
XHE : 116715807 116722703(kdm6a) 116728548 116732543(kdm6b)
PRET : 103475798 103475867 103480559(kdm6b) 103481677(kdm6a)
PFOR : 103133914 103146601 103147098 103151380(kdm6a)
PLAI : 106935492 106946396(kdm6a) 106949253 106956949
PMEI : 106922823 106926456 106929272(kdm6a) 106933060
GAF : 122820206(kdm6ba) 122827183 122839553(kdm6a) 122844321
CVG : 107082570 107094733(kdm6a) 107099034(kdm6b) 107100775
CTUL : 119772681 119779467(kdm6ba) 119782260 119788067(kdm6bb)
GMU : 124861790 124870757(kdm6a) 124877008 124880302(kdm6ba)
NFU : 107376882(kdm6b) 107381076(kdm6a) 107386615
KMR : 108233868(kdm6bb) 108242869(kdm6ba) 108243541(kdm6a) 108249342
ALIM : 106528445 106531352 106533946 106536109 106536173
NWH : 119409868(kdm6ba) 119420632(kdm6bb) 119428746
AOCE : 111563862(kdm6a) 111571569(kdm6b) 111571985 111575440
MCEP : 125000983 125017525(kdm6a) 125018309(kdm6ba) 125020976
CSEM : 103389705 103391115(kdm6b) 103391558(kdm6a) 103394748
POV : 109628757 109639684 109644830(kdm6a) 109646092 109647343
SSEN : 122763570 122765644(kdm6a) 122766155(kdm6ba) 122779716(kdm6bb)
HHIP : 117752203(kdm6ba) 117754426(kdm6a) 117774849(kdm6bb) 117776223
HSP : 118103022(kdm6ba) 118103524 118120068(kdm6a) 118122237(kdm6bb)
LCF : 108872980 108893366(kdm6bb) 108897604 108902153(kdm6ba)
SDU : 111222373 111222703 111231320(kdm6b) 111237971(kdm6a)
SLAL : 111644560(kdm6a) 111646207 111650724 111663891
XGL : 120797597(kdm6ba) 120798292 120801186(kdm6a) 120803024(kdm6bb)
HCQ : 109507018 109508971 109519982(kdm6a) 109520893
SSCV : 125973259 125982096 125987237 125987995
BPEC : 110153870 110161072 110165024 110170646(kdm6a)
MALB : 109952094(kdm6a) 109960405 109971923(kdm6b) 109973222
BSPL : 114846735(kdm6a) 114851037(kdm6ba) 114866962 114870008
SASA : 106563383 106574735 106575616 106577775 106581938(kdm6a) 106586785 106603203 106608825
STRU : 115154632 115155919(kdm6a) 115161303 115194957 115196340 115199245 115204229
OTW : 112214656 112224689 112225319(kdm6a) 112228164 112231371 112236313 112253657 112255120
OMY : 110495476 110500512(kdm6ba) 110501360(kdm6a) 110504760 110509928 110528830 110532943 110533940(kdm6bb)
OGO : 124006864 124007660 124007930 124008212 124011612 124013640(kdm6ba) 124043906(kdm6a) 124044230
ONE : 115101288 115112009(kdm6a) 115115956 115121450 115129892 115133457 115135678 115139061
SALP : 111950732 111953391 111959292(kdm6a) 111964136 112070053 112075506 112078832
SNH : 120021337 120030670 120049704 120051481 120057216 120058524 120064334(kdm6a)
CCLU : 121536590 121541799 121554733(kdm6a) 121556958(kdm6al) 121572615(kdm6ba) 121579462 123482981
ELS : 105021924(kdm6a) 105023738 105024598 105028179(kdm6b)
SFM : 108920542 108929716(kdm6b) 108933158 108934098
PKI : 111832775(kdm6b) 111838184(kdm6a) 111852944 111856273
AANG : 118213586(kdm6a) 118224327 118236600(kdm6ba)
LOC : 102686522(kdm6b) 102692642(kdm6a)
PSPA : 121305716 121306486 121312462 121312463 121320590(kdm6a) 121328126
ARUT : 117404581 117405424 117406867(kdm6a) 117967968
PSEX : 120523644(kdm6a) 120525132(kdm6ba)
LCM : 102350275(KDM6A) 102354908(KDM6B)
RTP : 109919147(kdm6a) 109924747(kdm6b)
DSI : Dsimw501_GD22282(Dsim_GD22282)
AALB : 109407182 115258558
CEL : CELE_C29F7.6(jmjd-3.3) CELE_D2021.1(utx-1) CELE_F18E9.5(jmjd-3.1) CELE_F23D12.5(jmjd-3.2)
CBR : CBG_00576 CBG_05328 CBG_07453 CBG_16178 CBG_17151 CBG_22800(Cbr-utx-1) CBG_22801(Cbr-tag-279) CBG_22802 CBG_23054
» show all
Taxonomy
Reference
Authors
De Santa F, Totaro MG, Prosperini E, Notarbartolo S, Testa G, Natoli G
Title
The histone H3 lysine-27 demethylase Jmjd3 links inflammation to inhibition of polycomb-mediated gene silencing.
Journal
Sequence
Reference
Authors
Hong S, Cho YW, Yu LR, Yu H, Veenstra TD, Ge K
Title
Identification of JmjC domain-containing UTX and JMJD3 as histone H3 lysine 27 demethylases.
Journal
Sequence
Reference
Authors
Lan F, Bayliss PE, Rinn JL, Whetstine JR, Wang JK, Chen S, Iwase S, Alpatov R, Issaeva I, Canaani E, Roberts TM, Chang HY, Shi Y
Title
A histone H3 lysine 27 demethylase regulates animal posterior development.
Journal
Sequence
Reference
Authors
Lee MG, Villa R, Trojer P, Norman J, Yan KP, Reinberg D, Di Croce L, Shiekhattar R
Title
Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination.
Journal
Sequence
Reference
Authors
Xiang Y, Zhu Z, Han G, Lin H, Xu L, Chen CD
Title
JMJD3 is a histone H3K27 demethylase.
Journal
Sequence
Other DBs